BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042599
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              221   5e-56
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   221   5e-56
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...   213   2e-53
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   211   8e-53
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   209   2e-52

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  221 bits (564), Expect = 5e-56
 Identities = 110/175 (62%), Positives = 135/175 (77%)
 Frame = -1

Query: 537  QSIFAAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWAMMKEILLCGAKFKNDEVDRRVI 358
            Q  F AGEPVGVLAATAMSNPAYKAVLDSSPSSN+SW +MKEILLC   FKND +DRRVI
Sbjct: 883  QHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVI 942

Query: 357  LYLNGCDCGRKHCGENAAYMVKKQLKRISLKDAAVEFLIEYNSQQTDFSSAKIDAGLVGH 178
            LYLN CDCGRK+C ENAAY+VK QLK+ SLKD AVEF+IEY  Q     S++   GLVGH
Sbjct: 943  LYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGH 1002

Query: 177  FHLDELKMKNSNVSIDDVLEKCQDTLHKFSKKKKGRVGILFSRIGLSVSQFCSFR 13
             HL++L +++ NVS+ +V +KC++T++ F KKK   VG  F +I LS  + C+F+
Sbjct: 1003 IHLNKLLLQDLNVSMQEVCQKCEETINSFRKKK--NVGPFFKKIILSFRECCTFQ 1055


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  221 bits (564), Expect = 5e-56
 Identities = 110/175 (62%), Positives = 135/175 (77%)
 Frame = -1

Query: 537  QSIFAAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWAMMKEILLCGAKFKNDEVDRRVI 358
            Q  F AGEPVGVLAATAMSNPAYKAVLDSSPSSN+SW +MKEILLC   FKND +DRRVI
Sbjct: 823  QHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVI 882

Query: 357  LYLNGCDCGRKHCGENAAYMVKKQLKRISLKDAAVEFLIEYNSQQTDFSSAKIDAGLVGH 178
            LYLN CDCGRK+C ENAAY+VK QLK+ SLKD AVEF+IEY  Q     S++   GLVGH
Sbjct: 883  LYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGH 942

Query: 177  FHLDELKMKNSNVSIDDVLEKCQDTLHKFSKKKKGRVGILFSRIGLSVSQFCSFR 13
             HL++L +++ NVS+ +V +KC++T++ F KKK   VG  F +I LS  + C+F+
Sbjct: 943  IHLNKLLLQDLNVSMQEVCQKCEETINSFRKKK--NVGPFFKKIILSFRECCTFQ 995


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2020

 Score =  213 bits (542), Expect = 2e-53
 Identities = 106/179 (59%), Positives = 134/179 (74%)
 Frame = -1

Query: 555  QTGALSQSIFAAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWAMMKEILLCGAKFKNDE 376
            Q G  ++ +F AGEPVGVLAATAMSNPAYKAVLD+SP+SN+SW +MKEILLC   F+N+ 
Sbjct: 821  QAGDKTEHLFPAGEPVGVLAATAMSNPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEP 880

Query: 375  VDRRVILYLNGCDCGRKHCGENAAYMVKKQLKRISLKDAAVEFLIEYNSQQTDFSSAKID 196
            VDRRVILYLN CDCG   C ENAAY VK QL+++SLK+AAVEF+IEY  Q+T   +++ D
Sbjct: 881  VDRRVILYLNDCDCGGSCCRENAAYSVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETD 940

Query: 195  AGLVGHFHLDELKMKNSNVSIDDVLEKCQDTLHKFSKKKKGRVGILFSRIGLSVSQFCS 19
            AGLVGH +LDE+ ++   +S+ +V EKC + L  FS+KKK  V      I LS S+ CS
Sbjct: 941  AGLVGHIYLDEMMLEELKISMANVFEKCLERLKSFSRKKK--VNQYLKNIELSFSESCS 997


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2098

 Score =  211 bits (536), Expect = 8e-53
 Identities = 110/192 (57%), Positives = 136/192 (70%), Gaps = 7/192 (3%)
 Frame = -1

Query: 555  QTGALSQSIFAAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWAMMKEILLCGAKFKNDE 376
            Q G  S+ +F AGEPVGVLAATAMSNPAYKAVLD+SPSSN+SW +MKEILLC   F+N+ 
Sbjct: 821  QAGDKSEHLFPAGEPVGVLAATAMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFRNEL 880

Query: 375  VDRRVILYLNGCDCGRKHCGENAAYMVKKQLKRISLKDAAVEFLIEYNSQQTDFSSAKID 196
            VDRRVILYLN CDCG  +C ENAAY VK QL+++SLKDAAVEF+IEY  Q+T   +++ D
Sbjct: 881  VDRRVILYLNDCDCGGSYCRENAAYSVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETD 940

Query: 195  AGLVGHFHLDELKMKNSNVSIDDVLEKCQDTLHKFSKKKKGRVGILFSRIGLSVSQFCS- 19
             GLVGH +LDE+ ++   +S+  V +KC + L  FS+KKK  V      I LS S F   
Sbjct: 941  VGLVGHIYLDEMMLEELKISMAYVFDKCHERLKSFSQKKK--VNQSLKNIELSFSLFVGL 998

Query: 18   ------FRLTSE 1
                  F L+SE
Sbjct: 999  YHFLIMFHLSSE 1010


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  209 bits (532), Expect = 2e-52
 Identities = 105/178 (58%), Positives = 131/178 (73%)
 Frame = -1

Query: 549 GALSQSIFAAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSWAMMKEILLCGAKFKNDEVD 370
           G+   S F AG+PVGVLAATAMSNPAYKA LDSSPSSN+SW MMKEILLCG  FKND  D
Sbjct: 370 GSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSPSSNSSWEMMKEILLCGVSFKNDVSD 429

Query: 369 RRVILYLNGCDCGRKHCGENAAYMVKKQLKRISLKDAAVEFLIEYNSQQTDFSSAKIDAG 190
           RRVILYLN C C R +C E AAY+VK  L ++ LKDAA EFLIEY  +Q  + +++   G
Sbjct: 430 RRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYENSETGTG 489

Query: 189 LVGHFHLDELKMKNSNVSIDDVLEKCQDTLHKFSKKKKGRVGILFSRIGLSVSQFCSF 16
           L+GH  L++ +++N  +S+ +V E+CQ+ +  F  KKK  +G LF RI LSVS+FCSF
Sbjct: 490 LIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKK--IGNLFKRIVLSVSEFCSF 545