BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042568
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18448.3| unnamed protein product [Vitis vinifera]               78   1e-20
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    78   1e-20
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...    78   1e-20
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...    69   8e-17
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...    67   2e-16

>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 78.2 bits (191), Expect(2) = 1e-20
 Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
 Frame = +2

Query: 116 LRFYSRISRPPPNCTPKSHTVVRVSPKTNIAHLGPPRKNEHTPRQLLSXXXXXXXXXXXX 295
           +R YSRI+ P P     +  V+RVS   N+A LG P++    PRQLLS            
Sbjct: 16  VRHYSRIAPPRP---ASAAPVIRVS--NNVAQLGSPKEGPK-PRQLLSLPPFPAHPLPGK 69

Query: 296 X---------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDH 448
                      VTAISW+K+YF EI   V+QSHF KGLVH++  N  D  SL K+GQ+  
Sbjct: 70  SLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDS-SLEKEGQIKP 128

Query: 449 LRK 457
           LRK
Sbjct: 129 LRK 131



 Score = 47.0 bits (110), Expect(2) = 1e-20
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 465 QIRHNEVMKTGARIYVPVSVAETRISKRFN 554
           +I+ NEVM+ G RIYVPVSVAE RISKRF+
Sbjct: 131 KIKPNEVMEAGTRIYVPVSVAEARISKRFD 160


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score = 78.2 bits (191), Expect(2) = 1e-20
 Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
 Frame = +2

Query: 116 LRFYSRISRPPPNCTPKSHTVVRVSPKTNIAHLGPPRKNEHTPRQLLSXXXXXXXXXXXX 295
           +R YSRI+ P P     +  V+RVS   N+A LG P++    PRQLLS            
Sbjct: 16  VRHYSRIAPPRP---ASAAPVIRVS--NNVAQLGSPKEGPK-PRQLLSLPPFPAHPLPGK 69

Query: 296 X---------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQMDH 448
                      VTAISW+K+YF EI   V+QSHF KGLVH++  N  D  SL K+GQ+  
Sbjct: 70  SLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDS-SLEKEGQIKP 128

Query: 449 LRK 457
           LRK
Sbjct: 129 LRK 131



 Score = 47.0 bits (110), Expect(2) = 1e-20
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 465 QIRHNEVMKTGARIYVPVSVAETRISKRFN 554
           +I+ NEVM+ G RIYVPVSVAE RISKRF+
Sbjct: 131 KIKPNEVMEAGTRIYVPVSVAEARISKRFD 160


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score = 77.8 bits (190), Expect(2) = 1e-20
 Identities = 59/125 (47%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
 Frame = +2

Query: 95  RAVMLRGLRFYSRISRPPPNCTPKSHTVVRVSPKTNIAHLGPPRKNEHTPRQLLSXXXXX 274
           R V+ +G R YSRI+ PPP     ++ V+RVS   N+AHLG P K+   PRQLLS     
Sbjct: 8   RRVVSQG-RSYSRIAPPPP---AYANPVIRVS--NNVAHLGSP-KDGPKPRQLLSLPPFP 60

Query: 275 XXXXXXXX----RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSDGLSLYKQGQM 442
                        VTAISW+K+YF EI D  IQSHF KGL HI+  N S   S+   GQM
Sbjct: 61  GLPLPGRNSMASHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSG--SIEYGGQM 118

Query: 443 DHLRK 457
             LRK
Sbjct: 119 S-LRK 122



 Score = 47.4 bits (111), Expect(2) = 1e-20
 Identities = 20/30 (66%), Positives = 28/30 (93%)
 Frame = +3

Query: 465 QIRHNEVMKTGARIYVPVSVAETRISKRFN 554
           +I+HN++M+ GAR++V VSVAETRISKRF+
Sbjct: 122 KIKHNDIMEAGARVHVAVSVAETRISKRFD 151


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score = 68.6 bits (166), Expect(2) = 8e-17
 Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
 Frame = +2

Query: 119 RFYSRISRPPPNCTPKSHTVVRVSPKTNIAHLGPPRKNEHTPRQLLSXXXXXXXXXXXXX 298
           R YSR++ PP +       V+RV+   NIAHLGPP++    PRQL+S             
Sbjct: 18  RRYSRVAPPPSS-------VLRVT--NNIAHLGPPKQGP-LPRQLISLPPFPGYPLPGKN 67

Query: 299 -----------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSD 412
                       VTAISW+KFYF+EI D  IQ+HF KGLV ++   R D
Sbjct: 68  AGVDGDEGDSGHVTAISWVKFYFEEIHDKAIQTHFTKGLVQMEFRGRRD 116



 Score = 43.5 bits (101), Expect(2) = 8e-17
 Identities = 18/30 (60%), Positives = 27/30 (90%)
 Frame = +3

Query: 465 QIRHNEVMKTGARIYVPVSVAETRISKRFN 554
           +I+HNEVM+ G +I++PVS+AE RISKR++
Sbjct: 130 KIKHNEVMEIGDKIWLPVSIAEMRISKRYD 159


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score = 67.4 bits (163), Expect(2) = 2e-16
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
 Frame = +2

Query: 116 LRFYSRISRPPPNCTPKSHTVVRVSPKTNIAHLGPPRKNEHTPRQLLSXXXXXXXXXXXX 295
           +R YSR++ PP +       V+RV+   N+AHLGPP++    PRQL+S            
Sbjct: 17  IRRYSRVAPPPSS-------VIRVT--NNVAHLGPPKQGP-LPRQLISLPPFPGHPLPGK 66

Query: 296 X------------RVTAISWMKFYFQEIDDLVIQSHFKKGLVHIDDDNRSD 412
                         VTAISW+K+YF+EI D  IQ+HF KGLV ++   R D
Sbjct: 67  NAGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRD 117



 Score = 43.5 bits (101), Expect(2) = 2e-16
 Identities = 18/30 (60%), Positives = 27/30 (90%)
 Frame = +3

Query: 465 QIRHNEVMKTGARIYVPVSVAETRISKRFN 554
           +I+HNEVM+ G +I++PVS+AE RISKR++
Sbjct: 131 KIKHNEVMQIGDKIWLPVSIAEMRISKRYD 160