BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042459
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABU85224.1| RNA polymerase alpha subunit [Anethum graveolens]      422   e-116
ref|YP_740149.1| RNA polymerase alpha subunit [Daucus carota] gi...   418   e-115
ref|YP_004222678.1| RNA polymerase alpha subunit [Anthriscus cer...   418   e-115
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [...   414   e-114
ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng] gi...   412   e-113

>gb|ABU85224.1| RNA polymerase alpha subunit [Anethum graveolens]
          Length = 338

 Score =  422 bits (1086), Expect = e-116
 Identities = 210/216 (97%), Positives = 212/216 (98%), Gaps = 2/216 (0%)
 Frame = +3

Query: 3   LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTLVGIQESVHD 182
           LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAK +KIPHEYSTLVGIQESVHD
Sbjct: 27  LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSKKIPHEYSTLVGIQESVHD 86

Query: 183 ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 362
           ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH
Sbjct: 87  ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 146

Query: 363 IGLQIERSRGYLIKTPNNNFQGGSYPIDAVFMPVRNANHSIHSY--GNGNDKQEILFLEI 536
           IGLQIERSRGYLIKTPNNNFQ GSYPIDAVFMP+RNANHSIHSY  GNGNDKQEILFLEI
Sbjct: 147 IGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPIRNANHSIHSYGNGNGNDKQEILFLEI 206

Query: 537 WTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 644
           WTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL
Sbjct: 207 WTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 242


>ref|YP_740149.1| RNA polymerase alpha subunit [Daucus carota]
           gi|122239960|sp|Q0G9T0.1|RPOA_DAUCA RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|113200939|gb|ABI32455.1| RNA polymerase alpha subunit
           [Daucus carota]
          Length = 353

 Score =  418 bits (1075), Expect = e-115
 Identities = 207/214 (96%), Positives = 210/214 (98%)
 Frame = +3

Query: 3   LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTLVGIQESVHD 182
           LYYGRFILSPLMKGQADTIGI+MRRALLGEIEGTCITRAK EKIPHEYSTLVGIQESVHD
Sbjct: 27  LYYGRFILSPLMKGQADTIGISMRRALLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHD 86

Query: 183 ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 362
           ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIEL 
Sbjct: 87  ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELC 146

Query: 363 IGLQIERSRGYLIKTPNNNFQGGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 542
           IGLQIER+RGYLIKTPNNN + GSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT
Sbjct: 147 IGLQIERNRGYLIKTPNNNSKDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 206

Query: 543 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 644
           NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL
Sbjct: 207 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 240


>ref|YP_004222678.1| RNA polymerase alpha subunit [Anthriscus cerefolium]
           gi|289645607|gb|ADD13670.1| RNA polymerase alpha subunit
           [Anthriscus cerefolium]
          Length = 338

 Score =  418 bits (1074), Expect = e-115
 Identities = 206/214 (96%), Positives = 210/214 (98%)
 Frame = +3

Query: 3   LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTLVGIQESVHD 182
           LYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGTCITRAKF+KIPHEYSTL+GIQESVHD
Sbjct: 27  LYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFDKIPHEYSTLMGIQESVHD 86

Query: 183 ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 362
           ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIEL 
Sbjct: 87  ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELC 146

Query: 363 IGLQIERSRGYLIKTPNNNFQGGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 542
           IGLQIER+RGYLIKTPNNN Q GSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT
Sbjct: 147 IGLQIERNRGYLIKTPNNNSQDGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 206

Query: 543 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 644
           NGSLTPKEALHEASRNLIDLFI FLHTEEENLHL
Sbjct: 207 NGSLTPKEALHEASRNLIDLFITFLHTEEENLHL 240


>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
           senticosus] gi|347448239|gb|AEO92651.1| RNA polymerase
           alpha subunit (chloroplast) [Eleutherococcus senticosus]
          Length = 353

 Score =  414 bits (1064), Expect = e-114
 Identities = 202/214 (94%), Positives = 209/214 (97%)
 Frame = +3

Query: 3   LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTLVGIQESVHD 182
           LYYGRFILSPLMKGQADTIGIAMRRALLGE+EGTCITRAK EKIPHEYSTLVGIQESVH+
Sbjct: 27  LYYGRFILSPLMKGQADTIGIAMRRALLGELEGTCITRAKSEKIPHEYSTLVGIQESVHE 86

Query: 183 ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 362
           ILMNLKEI+LRSNLYGTCDASICVRGPGYVTAQDII PPYVE+VDNTQHIASL EPI+L 
Sbjct: 87  ILMNLKEIILRSNLYGTCDASICVRGPGYVTAQDIISPPYVEIVDNTQHIASLAEPIDLC 146

Query: 363 IGLQIERSRGYLIKTPNNNFQGGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 542
           IGLQIER+RGYLIKTPNNNFQ GSYPIDAVFMPVRNANHSIHSYGNGN+KQEILFLEIWT
Sbjct: 147 IGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWT 206

Query: 543 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 644
           NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL
Sbjct: 207 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 240


>ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng]
           gi|68053096|sp|Q68RX5.1|RPOA_PANGI RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|51235344|gb|AAT98540.1| RNA polymerase alpha subunit
           [Panax ginseng]
          Length = 353

 Score =  412 bits (1059), Expect = e-113
 Identities = 200/214 (93%), Positives = 209/214 (97%)
 Frame = +3

Query: 3   LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTLVGIQESVHD 182
           LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAK EKIPHEYSTLVGIQESVH+
Sbjct: 27  LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHE 86

Query: 183 ILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEVVDNTQHIASLTEPIELH 362
           ILMNLKEI+L+SNLYGTCDASIC+RGPGYVTAQDII PPYVE+VDNTQHIASL EPI+L 
Sbjct: 87  ILMNLKEIILKSNLYGTCDASICIRGPGYVTAQDIISPPYVEIVDNTQHIASLAEPIDLC 146

Query: 363 IGLQIERSRGYLIKTPNNNFQGGSYPIDAVFMPVRNANHSIHSYGNGNDKQEILFLEIWT 542
           IGLQIER+RGYLIKTPNNNFQ GSYPIDAVFMPVRNANHSIHSYGNGN+KQEILFLEIWT
Sbjct: 147 IGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWT 206

Query: 543 NGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 644
           NGSLTPKEALH+ASRNLIDLFIPFLHTEEENLHL
Sbjct: 207 NGSLTPKEALHQASRNLIDLFIPFLHTEEENLHL 240