BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042286
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    90   2e-16
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  90   2e-16
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    90   2e-16
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    89   5e-16

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score =  102 bits (254), Expect = 3e-20
 Identities = 52/106 (49%), Positives = 70/106 (66%)
 Frame = -3

Query: 482 RTTVVRIRNIFPGVLCKHISIFKTFGNIRASFQRSSTIMDVHFSITEWPNMLQILNKMNG 303
           RTTVVRI NI P      ++I K+FG +     R   I DV+F I EWPNML ILN +NG
Sbjct: 577 RTTVVRILNINPQCRSNVLTICKSFGKLWRMKLRHENIADVYFKIDEWPNMLNILNSLNG 636

Query: 302 MQVDGVKLIAEPAPIVPSDVLLQIYSQPEERKHVKSNMLRLLKKLE 165
           ++ DG + +A+PA I P  +L  +++ P+ER+HV S+M  LLKKLE
Sbjct: 637 LEADGSRWVAQPASIFPPIILQALWNHPDERRHVISSMQCLLKKLE 682


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = -3

Query: 482 RTTVVRIRNIFPGVLCKHISIFKTFGNIRASFQRSSTIMDVHFSITEWPNMLQILNKMNG 303
           RT V RI N+    +    ++   +G IR  + R + + DV F I+EWPNML ILN MNG
Sbjct: 648 RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILNSMNG 707

Query: 302 MQVDGVKLIAEPA-PIVPSDVLLQIYSQPEERKHVKSNMLRLLKKLEE 162
           M++DG KL+  PA  ++P ++L  ++  P E+++VKS +  L++++E+
Sbjct: 708 MEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREIEQ 755


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = -3

Query: 482 RTTVVRIRNIFPGVLCKHISIFKTFGNIRASFQRSSTIMDVHFSITEWPNMLQILNKMNG 303
           RT V RI N+    +    ++   +G IR  + R + + DV F I+EWPNML ILN MNG
Sbjct: 103 RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILNSMNG 162

Query: 302 MQVDGVKLIAEPA-PIVPSDVLLQIYSQPEERKHVKSNMLRLLKKLEE 162
           M++DG KL+  PA  ++P ++L  ++  P E+++VKS +  L++++E+
Sbjct: 163 MEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREIEQ 210


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|11994322|dbj|BAB02281.1| unnamed protein product
            [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
            recognition motif-containing protein [Arabidopsis
            thaliana]
          Length = 811

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = -3

Query: 482  RTTVVRIRNIFPGVLCKHISIFKTFGNIRASFQRSSTIMDVHFSITEWPNMLQILNKMNG 303
            RT V RI N+    +    ++   +G IR  + R + + DV F I+EWPNML ILN MNG
Sbjct: 688  RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVADVFFDISEWPNMLAILNSMNG 747

Query: 302  MQVDGVKLIAEPA-PIVPSDVLLQIYSQPEERKHVKSNMLRLLKKLEE 162
            M++DG KL+  PA  ++P ++L  ++  P E+++VKS +  L++++E+
Sbjct: 748  MEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVKSVIQNLVREIEQ 795


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 40/108 (37%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
 Frame = -3

Query: 482 RTTVVRIRNIFPGVLCKHISIFKTFGNIRASFQRSSTIMDVHFSITEWPNMLQILNKMNG 303
           RTTV RI N+    +    ++   +G I+  + R + ++DV F ++EWPNML ILN +NG
Sbjct: 662 RTTVARISNLSKSAMKDVRALCVPYGQIKQVYIRGNGVVDVLFDVSEWPNMLNILNSLNG 721

Query: 302 MQVDGVKLIAEPA-PIVPSDVLLQIYSQPEERKHVKSNMLRLLKKLEE 162
           M +DG KL+  PA  ++P ++L  ++  P+E+++VKS +  L++++E+
Sbjct: 722 MGIDGKKLVVRPATTVIPPEILRVLWKDPQEKRYVKSVIQNLVREIEQ 769