BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042068
         (862 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACB28472.1| polyprotein [Ananas comosus]                           311   1e-82
gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putativ...   286   5e-75
gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69...   284   2e-74
gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]     280   4e-73
emb|CAJ00278.1| hypothetical protein [Lotus japonicus]                257   3e-66

>gb|ACB28472.1| polyprotein [Ananas comosus]
          Length = 953

 Score =  311 bits (797), Expect = 1e-82
 Identities = 154/295 (52%), Positives = 207/295 (70%), Gaps = 11/295 (3%)
 Frame = -3

Query: 857 IPAMAVRVADGGQLICDKIIKGFSWKMQGVQFQADVMLLPLSGSDLVLGIDWFTQLGPVL 678
           IPA+ V VADG +LI     + F WKMQG++F+A+++LLPL G D+VLG+ W  QLGP+L
Sbjct: 51  IPAVNVTVADGNKLISSSTCRAFKWKMQGLEFKANLLLLPLRGCDMVLGVQWLKQLGPIL 110

Query: 677 WDFSKLTMQFTYQNEQVKLRGSTGKRLKGIQANKLNKLMRSVGELSMLQIIPVANAHTPQ 498
           WDFSKL M+F +Q +++ LRGS+G  LK I+  +L K++     LS + +  +    TPQ
Sbjct: 111 WDFSKLRMEFQFQGQKIVLRGSSGPSLKIIEGKQLKKMVLDDTALSAVHLCSIHA--TPQ 168

Query: 497 LGNQDKVTE-----------VIPPEVTKVLNQFPTVFSAPRGLPPQRNQFDHKIPLKEGT 351
            GN    +E               ++  +L +   +F  P+GLPP R   DHKIPLKEGT
Sbjct: 169 EGNHIATSEDAETTWSGLGKAYSQQLQLLLEEHSDLFEEPQGLPPVRLH-DHKIPLKEGT 227

Query: 350 DAVNVRPYRYSVQQKTVIEELIQEMMDQGVIRHSSSPFAAPIVLVKKKDGGWRMCTDYRG 171
           + +NVRPYRY   QKT IE+L+QEM+ QGVI  S+SP+++P+VLVKKKDG WR+C DYR 
Sbjct: 228 NPINVRPYRYPAYQKTEIEKLVQEMLSQGVITPSNSPYSSPVVLVKKKDGSWRLCIDYRS 287

Query: 170 LNKATIKDKFPIPIIEELLDELHGSKYFSKIDLKSGYHQIRVSPADIHKTAFKTH 6
           LN +TIKDKFPIP+++ELLDEL G+K FS++DL+SGYHQIR+   DI KTAF+TH
Sbjct: 288 LNDSTIKDKFPIPLVDELLDELSGAKLFSELDLRSGYHQIRMHADDISKTAFRTH 342


>gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
          Length = 1447

 Score =  286 bits (731), Expect = 5e-75
 Identities = 140/281 (49%), Positives = 193/281 (68%), Gaps = 2/281 (0%)
 Frame = -3

Query: 842  VRVADGGQLICDKIIKGFSWKMQGVQFQADVMLLPLSGSDLVLGIDWFTQLGPVLWDFSK 663
            V VADG +L  D  IKGF+WK+Q   FQ+D++L+PL G D+VLG+ W   LG + W+F K
Sbjct: 413  VAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKK 472

Query: 662  LTMQFTYQNEQVKLRGSTGKRLKGIQANKLNKLMRSVGELSMLQIIPVANAHTPQLGNQD 483
            L MQF Y+N++V L G     ++ I+A+KL K      +L+M+ +  V +    ++G+  
Sbjct: 473  LEMQFFYKNQRVWLHGIITGSVRDIKAHKLQKTQADQIQLAMVCVREVVSDEEQEIGSIS 532

Query: 482  KVTEVIPPE--VTKVLNQFPTVFSAPRGLPPQRNQFDHKIPLKEGTDAVNVRPYRYSVQQ 309
             +T  +  E  V  ++ +FP VF+ P  LPP R + DHKI L EG + VN RPYRY V Q
Sbjct: 533  ALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQ 592

Query: 308  KTVIEELIQEMMDQGVIRHSSSPFAAPIVLVKKKDGGWRMCTDYRGLNKATIKDKFPIPI 129
            K  I++++Q+M+  G I+ SSSPFA+P+VLVKKKDG WR+C DY  LN  T+KD+F IP+
Sbjct: 593  KDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPL 652

Query: 128  IEELLDELHGSKYFSKIDLKSGYHQIRVSPADIHKTAFKTH 6
            IE+L+DEL GS  FSKIDL++GYHQ+R+ P DI KTAFKTH
Sbjct: 653  IEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTH 693


>gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
            thaliana] gi|10998138|dbj|BAB03109.1| retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 1499

 Score =  284 bits (727), Expect = 2e-74
 Identities = 135/281 (48%), Positives = 195/281 (69%), Gaps = 2/281 (0%)
 Frame = -3

Query: 842  VRVADGGQLICDKIIKGFSWKMQGVQFQADVMLLPLSGSDLVLGIDWFTQLGPVLWDFSK 663
            V VADG +L  +  +  FSWK+Q   FQ+D++L+PL G D+VLG+ W   LG + W+F K
Sbjct: 434  VSVADGRKLRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKK 493

Query: 662  LTMQFTYQNEQVKLRGSTGKRLKGIQANKLNKLMRSVGELSMLQIIPVANAHTPQLGNQD 483
            L M+F + N++V L G T   ++ ++A KL KL     +L+ML +  V+ +   +L   +
Sbjct: 494  LEMRFKFNNQKVLLHGLTSGSVREVKAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTIN 553

Query: 482  KVTEVIPPE--VTKVLNQFPTVFSAPRGLPPQRNQFDHKIPLKEGTDAVNVRPYRYSVQQ 309
             +T  +  E  V +VLN++P +F  P  LPP R + +HKI L EG++ VN RPYRYS+ Q
Sbjct: 554  ALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQ 613

Query: 308  KTVIEELIQEMMDQGVIRHSSSPFAAPIVLVKKKDGGWRMCTDYRGLNKATIKDKFPIPI 129
            K  I++L+++++  G ++ SSSP+A+P+VLVKKKDG WR+C DYR LN  T+KD FPIP+
Sbjct: 614  KNEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPL 673

Query: 128  IEELLDELHGSKYFSKIDLKSGYHQIRVSPADIHKTAFKTH 6
            IE+L+DEL G+  FSKIDL++GYHQ+R+ P DI KTAFKTH
Sbjct: 674  IEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTH 714


>gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]
          Length = 1557

 Score =  280 bits (715), Expect = 4e-73
 Identities = 134/285 (47%), Positives = 192/285 (67%), Gaps = 4/285 (1%)
 Frame = -3

Query: 848  MAVRVADGGQLICDKIIKGFSWKMQGVQFQADVMLLPLSGSDLVLGIDWFTQLGPVLWDF 669
            M V  A GG+ +     K F+W+MQG  F  +V  LPL   D+VLG+ W   LGP+LWDF
Sbjct: 515  MTVDAALGGKTVTLFRSKDFTWRMQGYSFTTEVRTLPLDHWDIVLGVQWLATLGPILWDF 574

Query: 668  SKLTMQFTYQNEQVKLRGSTGKRLKGIQANKLNKLMRSVGELSMLQIIPVANAHTPQLGN 489
            + L M+FT    +  LRG+     K I+ NKLNK++    +++ LQ+    +A +     
Sbjct: 575  TYLRMEFTLNGAKYILRGTAKAGCKVIKGNKLNKILSQEPQVAFLQLYDPESATSVGASL 634

Query: 488  Q----DKVTEVIPPEVTKVLNQFPTVFSAPRGLPPQRNQFDHKIPLKEGTDAVNVRPYRY 321
                 D+ T +    +  +L  +  +F  P GLPP R  FDH+IP++ G   V++RPYRY
Sbjct: 635  SHIAVDESTSLSDATLQALLEAYEDLFIEPTGLPPFRKGFDHQIPVEAGASPVSLRPYRY 694

Query: 320  SVQQKTVIEELIQEMMDQGVIRHSSSPFAAPIVLVKKKDGGWRMCTDYRGLNKATIKDKF 141
            +  QK +I+ +++EM+ QG+I++SSSP+A+P+VLVKKKDG WR+C DYRG+NK TIKDK+
Sbjct: 695  NSIQKDIIDRMVREMLSQGIIQNSSSPYASPVVLVKKKDGSWRLCVDYRGVNKQTIKDKY 754

Query: 140  PIPIIEELLDELHGSKYFSKIDLKSGYHQIRVSPADIHKTAFKTH 6
            PIP++E+LLDEL GS YFSK+DL++G+HQIR+ P D++KTAFKTH
Sbjct: 755  PIPLLEDLLDELGGSTYFSKLDLRAGFHQIRMHPHDVYKTAFKTH 799


>emb|CAJ00278.1| hypothetical protein [Lotus japonicus]
          Length = 1508

 Score =  257 bits (656), Expect = 3e-66
 Identities = 131/289 (45%), Positives = 182/289 (62%), Gaps = 10/289 (3%)
 Frame = -3

Query: 842  VRVADGGQLICDKIIKGFSWKMQGVQFQADVMLLPLSGSDLVLGIDWFTQLGPVLWDFSK 663
            + VADGG +      +G SWKMQG  F  + + +PLS  DL+LG+ W  Q G + WDF+ 
Sbjct: 422  ITVADGGIIQGTGWCEGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKISWDFTN 481

Query: 662  LTMQFTYQNEQVKLRGSTGKRLKGIQANKLNKLMRSVGELSMLQIIPV------ANAHTP 501
            L M+F    E V+L+    K  K + A KL+ ++       +LQI+P             
Sbjct: 482  LIMEFAMGTEMVRLQAMEEKENKLVTAAKLHHMVGEDKFSFLLQILPCFQEVACCTIKAT 541

Query: 500  QLGNQ----DKVTEVIPPEVTKVLNQFPTVFSAPRGLPPQRNQFDHKIPLKEGTDAVNVR 333
            + GN     +   E +      +L  +  VF  P  LPP R   DHKI LK+G++ V++R
Sbjct: 542  ESGNSGLSSEGGNEELQAHKEAILQDYSDVFEEPAQLPPFRGIHDHKIILKDGSNPVSLR 601

Query: 332  PYRYSVQQKTVIEELIQEMMDQGVIRHSSSPFAAPIVLVKKKDGGWRMCTDYRGLNKATI 153
            PYRY   QK VI+++++E+++ GVI+ SSSPFA+PIVLVKKKDG WRMC DYR LN  T+
Sbjct: 602  PYRYPPAQKDVIDKMVKELLESGVIQPSSSPFASPIVLVKKKDGSWRMCVDYRKLNDMTV 661

Query: 152  KDKFPIPIIEELLDELHGSKYFSKIDLKSGYHQIRVSPADIHKTAFKTH 6
            K KFPIP++E+LLDEL G+K FSK+DL++GYHQ+R+ P D+ KTAF+TH
Sbjct: 662  KAKFPIPLVEDLLDELGGAKIFSKLDLRAGYHQLRMRPEDVEKTAFQTH 710