BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00042048
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]     254   6e-66
ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana] gi|1...   253   1e-65
ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana] g...   253   1e-65
ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arab...   249   2e-64
emb|CBI24922.3| unnamed protein product [Vitis vinifera]              247   8e-64

>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  254 bits (649), Expect = 6e-66
 Identities = 123/181 (67%), Positives = 155/181 (85%)
 Frame = -3

Query: 544 DGDVFTLMEKRVVDIAACLGKSVKVVLNGQQVPINSFTDYINLYPNAAGENKVEPLQRIV 365
           + DV  LM+KRV+D+A CLGK+VKV LNG +VP+ SF DY++LY  +AG+++  PL R+ 
Sbjct: 234 EDDVVALMQKRVIDLAGCLGKTVKVELNGTRVPVKSFLDYVDLYLQSAGKSRDAPLLRLT 293

Query: 364 EKVNDRWEIGVSLSDGQFEQVSFVNGIATIKGGTHVDYVTSQLTNHIISVLNKQNKSANL 185
           EKVNDRWEI VSLSDGQF+QVSFVNGIATIKGGTHV+YVT Q+TNH+++++NK+NK+ANL
Sbjct: 294 EKVNDRWEICVSLSDGQFQQVSFVNGIATIKGGTHVNYVTDQITNHVMNIVNKKNKNANL 353

Query: 184 NANDVKSYLRVFVNALVDNPAFDSQAKETLTTQKSKFGSKCELSEAFLKNVVAKSGVVDP 5
            A++VK+YL VFVNAL+DNPAFDSQ KETLT + + FGSKCEL+ AFL N VAKSG+VD 
Sbjct: 354 KAHNVKNYLWVFVNALIDNPAFDSQTKETLTIRPNSFGSKCELTPAFL-NKVAKSGIVDS 412

Query: 4   L 2
           L
Sbjct: 413 L 413


>ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|1174740|sp|P30182.2|TOP2_ARATH RecName: Full=DNA
           topoisomerase 2; AltName: Full=DNA topoisomerase II
           gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis
           thaliana] gi|9294657|dbj|BAB03006.1| DNA topoisomerase
           II [Arabidopsis thaliana] gi|332643305|gb|AEE76826.1|
           DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  253 bits (646), Expect = 1e-65
 Identities = 126/182 (69%), Positives = 155/182 (85%), Gaps = 1/182 (0%)
 Frame = -3

Query: 544 DGDVFTLMEKRVVDIAACLGKSVKVVLNGQQVPINSFTDYINLYPNAAGENKVE-PLQRI 368
           + DV  LM KRV DIA CLGKSVKV LNG+Q+P+ SFTDY++LY +AA +++ E PL R+
Sbjct: 233 EDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRL 292

Query: 367 VEKVNDRWEIGVSLSDGQFEQVSFVNGIATIKGGTHVDYVTSQLTNHIISVLNKQNKSAN 188
            EKVNDRWE+ VSLS+GQF+QVSFVN IATIKGGTHVDYVTSQ+TNHI++ +NK+NK+AN
Sbjct: 293 TEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKNKNAN 352

Query: 187 LNANDVKSYLRVFVNALVDNPAFDSQAKETLTTQKSKFGSKCELSEAFLKNVVAKSGVVD 8
           + A++VK++L VFVNAL+DNPAFDSQ KETLT ++S FGSKCELSE FLK  V KSGVV+
Sbjct: 353 VKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKK-VGKSGVVE 411

Query: 7   PL 2
            L
Sbjct: 412 NL 413


>ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana]
           gi|332643306|gb|AEE76827.1| DNA topoisomerase 2
           [Arabidopsis thaliana]
          Length = 1438

 Score =  253 bits (646), Expect = 1e-65
 Identities = 126/182 (69%), Positives = 155/182 (85%), Gaps = 1/182 (0%)
 Frame = -3

Query: 544 DGDVFTLMEKRVVDIAACLGKSVKVVLNGQQVPINSFTDYINLYPNAAGENKVE-PLQRI 368
           + DV  LM KRV DIA CLGKSVKV LNG+Q+P+ SFTDY++LY +AA +++ E PL R+
Sbjct: 233 EDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRL 292

Query: 367 VEKVNDRWEIGVSLSDGQFEQVSFVNGIATIKGGTHVDYVTSQLTNHIISVLNKQNKSAN 188
            EKVNDRWE+ VSLS+GQF+QVSFVN IATIKGGTHVDYVTSQ+TNHI++ +NK+NK+AN
Sbjct: 293 TEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKNKNAN 352

Query: 187 LNANDVKSYLRVFVNALVDNPAFDSQAKETLTTQKSKFGSKCELSEAFLKNVVAKSGVVD 8
           + A++VK++L VFVNAL+DNPAFDSQ KETLT ++S FGSKCELSE FLK  V KSGVV+
Sbjct: 353 VKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKK-VGKSGVVE 411

Query: 7   PL 2
            L
Sbjct: 412 NL 413


>ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata] gi|297329310|gb|EFH59729.1| hypothetical protein
           ARALYDRAFT_898932 [Arabidopsis lyrata subsp. lyrata]
          Length = 1432

 Score =  249 bits (636), Expect = 2e-64
 Identities = 126/183 (68%), Positives = 153/183 (83%), Gaps = 2/183 (1%)
 Frame = -3

Query: 544 DGDVFTLMEKRVVDIAACLGKSVKVVLNGQQVPINSFTDYINLYPNAAGENKVEP--LQR 371
           + DV  LM KRV DIA CLGKSVKV LNG+Q+P+ SFTDY++LY  AA + + +P  L R
Sbjct: 230 EDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLKAANKLRADPDPLPR 289

Query: 370 IVEKVNDRWEIGVSLSDGQFEQVSFVNGIATIKGGTHVDYVTSQLTNHIISVLNKQNKSA 191
           I EKVNDRWE+ VSLS+GQF+QVSFVN IATIKGGTHVDYVTSQ+TN+I+ V+NK+NK+A
Sbjct: 290 ITEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNYIVGVVNKKNKNA 349

Query: 190 NLNANDVKSYLRVFVNALVDNPAFDSQAKETLTTQKSKFGSKCELSEAFLKNVVAKSGVV 11
           N+ A++VK++L VFVNAL+DNPAFDSQ KETLT ++S FGSKCELSE FLK  V KSGVV
Sbjct: 350 NVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKK-VGKSGVV 408

Query: 10  DPL 2
           + L
Sbjct: 409 ENL 411


>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  247 bits (631), Expect = 8e-64
 Identities = 121/181 (66%), Positives = 153/181 (84%)
 Frame = -3

Query: 544 DGDVFTLMEKRVVDIAACLGKSVKVVLNGQQVPINSFTDYINLYPNAAGENKVEPLQRIV 365
           + DV  LM+KRVVDIA CLGK+VKV LNGQ++P+ SF DY+NLY  +A +++ E L RI 
Sbjct: 228 EDDVVALMKKRVVDIAGCLGKTVKVELNGQRIPVKSFNDYVNLYLQSAAKSRPESLPRIA 287

Query: 364 EKVNDRWEIGVSLSDGQFEQVSFVNGIATIKGGTHVDYVTSQLTNHIISVLNKQNKSANL 185
           EKVN+RWEI VSLS+GQF+QVSFVN IATIKGGTHVDYVT+Q+ N ++S++NK+NK+AN+
Sbjct: 288 EKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNKKNKNANI 347

Query: 184 NANDVKSYLRVFVNALVDNPAFDSQAKETLTTQKSKFGSKCELSEAFLKNVVAKSGVVDP 5
            A+ VK++L VFVNAL+DNPAFDSQ KETLT ++S FGSKCELS+ FLK  V+KSGVV+ 
Sbjct: 348 KAHTVKNHLWVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKK-VSKSGVVES 406

Query: 4   L 2
           L
Sbjct: 407 L 407