BLASTX nr result
ID: Cnidium21_contig00041960
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00041960
(827 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib... 96 1e-25
ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu... 99 1e-23
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici... 88 5e-22
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub... 82 5e-19
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 89 2e-18
>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
At1g65750-like [Vitis vinifera]
Length = 820
Score = 95.5 bits (236), Expect(2) = 1e-25
Identities = 52/134 (38%), Positives = 73/134 (54%)
Frame = +3
Query: 369 WVKPQQNEVKITVDAAVFEGRGESGCGIIVRDHQGHLLLAKTKLISETLNPTLAEAISVK 548
W KP +KI VD AVF +G G + RDHQG + K P + EA+ V+
Sbjct: 664 WQKPDYGWIKINVDGAVFPDKG--AIGAVFRDHQGRFMGGFAKPFPHQTLPKVVEALGVR 721
Query: 549 EALSWANEMKWDRITVESDCLIVVQLIRSAVPLRSRLGSIIEDCREMARHFNSFKLYFIK 728
E LSW +E RI VE+DCL VVQ I+ + G II DC ++ +H ++ + +
Sbjct: 722 EVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTSFGFIIVDCLDVLQHLVDVQVVYAR 781
Query: 729 RSANMSAHELAHAS 770
RSAN +AH LA+ +
Sbjct: 782 RSANSAAHCLANGA 795
Score = 47.4 bits (111), Expect(2) = 1e-25
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 130 FMQWLQQILTGQSCSMKAKITTLCWSIWRSRNDLVWNNRKWPVLRVVAKAWEYLSQW 300
F+ WL + + AK +CW +W RND+VWN R W +VV + L W
Sbjct: 588 FVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESW 644
>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
[Medicago truncatula]
Length = 547
Score = 98.6 bits (244), Expect(2) = 1e-23
Identities = 50/145 (34%), Positives = 78/145 (53%)
Frame = +3
Query: 363 MTWVKPQQNEVKITVDAAVFEGRGESGCGIIVRDHQGHLLLAKTKLISETLNPTLAEAIS 542
+ W P +K VDAA+F + G G+ VRD +G L A T P AEA+
Sbjct: 55 IAWQPPAAGFLKCNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQEAEAVG 114
Query: 543 VKEALSWANEMKWDRITVESDCLIVVQLIRSAVPLRSRLGSIIEDCREMARHFNSFKLYF 722
+++A+ W +++ + +E DC +VV I ++ GSII+DCR + + F +FK+ F
Sbjct: 115 LRDAILWLGQLELSNVQLELDCKLVVDSIYDKNNNQAEFGSIIDDCRSLLQQFTNFKISF 174
Query: 723 IKRSANMSAHELAHASHMYPDRIFG 797
++R AN+ AH A S P +FG
Sbjct: 175 VRRQANVVAHSFARVSIFQP--LFG 197
Score = 37.7 bits (86), Expect(2) = 1e-23
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 196 LCWSIWRSRNDLVWNNRKWPVLRVVAKAWEYLSQWNVAQ 312
+ W IWR RND VW+ + P V A E L QW A+
Sbjct: 2 MLWCIWRRRNDKVWDGQLQPSNIAVQLARELLFQWQAAR 40
>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538337|gb|EEF39944.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 483
Score = 87.8 bits (216), Expect(2) = 5e-22
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Frame = +3
Query: 357 GAMTWVKPQQNEVKITVDAAVFEGRGESGCGIIVRDHQGHLLLAKTKLISETLNPTLAEA 536
G W KP + K+ VDA+ RG+SG ++RD+ G + + NP +AEA
Sbjct: 339 GDCLWQKPATGKYKLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRPYIANPDVAEA 398
Query: 537 ISVKEALSWANEMKWDRITVESDCLIVVQLIRSAVPLRSRLGSIIEDCREMARHFNSFKL 716
++KEALSW + + + +E+DCL ++L+ + S L +++DC+++ R N L
Sbjct: 399 WALKEALSWIHAKGMEEVQIETDCLRNIELLEEELHPNSYLLCLLKDCQDLLRVLNRCNL 458
Query: 717 YFIKRSANMSAHELAHA---SHMY 779
F+ SAN AH ++ A +HM+
Sbjct: 459 VFVYGSANTVAHMISKATCSAHMF 482
Score = 43.1 bits (100), Expect(2) = 5e-22
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 172 SMKAKITTLCWSIWRSRNDLVWNNRKWPVLRVVAKAWEYLSQWNVAQ 312
S+ A L WS+W + ND+VWN +K V ++A +L QW A+
Sbjct: 278 SIVASFVVLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWGKAR 324
>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula] gi|355513943|gb|AES95566.1| Replication
protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 82.0 bits (201), Expect(2) = 5e-19
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Frame = +3
Query: 369 WVKPQQNEVKITVDAAVFEGRGESGCGIIVRDHQGHLLLAKTKLISETLNPTLAEAISVK 548
W KP + K VDAA F+ G GI +RD G L+ A+T + L+ EAI +
Sbjct: 1564 WRKPDEGHFKCNVDAAFFKESNRVGIGICIRDDSGRLVKARTSWSTLLLDVPEGEAIGLL 1623
Query: 549 EALSWANEMKWDRITVESDCLIVVQLIRSAVPLRSRLGSIIEDCR-EMARHFNSFKLYFI 725
A+ WA E + IT E D VV + S LG+II +CR + F + ++ FI
Sbjct: 1624 YAIRWAKEQNLNNITFELDSKRVVYSFHNTRNDVSDLGAIIRECRTTFSSFFTNSRVEFI 1683
Query: 726 KRSANMSAHELAHASHMYPDRIFGWRTVPTKVKD 827
+R AN H LA A+ Y I + +P ++D
Sbjct: 1684 RRQANEVVHSLARAATFYAS-IHYFTVLPDCIQD 1716
Score = 38.9 bits (89), Expect(2) = 5e-19
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 118 VNVEFMQWLQQILTGQSCSMKAKITTLCWSIWRSRNDLVWNNRKWPVLRVVAKAWEYLSQ 297
+N+ F + +IL S + + WSIW+ RND +W N V + L+
Sbjct: 1497 LNLSFGVTMFEILQELDSSQRVIWACVMWSIWKQRNDCIWRNEVMTTAAVRDRGLNLLTG 1556
Query: 298 WNVAQ 312
W AQ
Sbjct: 1557 WQNAQ 1561
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 89.4 bits (220), Expect(2) = 2e-18
Identities = 48/153 (31%), Positives = 86/153 (56%)
Frame = +3
Query: 369 WVKPQQNEVKITVDAAVFEGRGESGCGIIVRDHQGHLLLAKTKLISETLNPTLAEAISVK 548
W P + I DAA+F G G ++RD+ G L+A +++IS+ + P LAEA++++
Sbjct: 1224 WQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIR 1283
Query: 549 EALSWANEMKWDRITVESDCLIVVQLIRSAVPLRSRLGSIIEDCREMARHFNSFKLYFIK 728
AL A E + I + SDCL V++ I+++ RS +G +IED +++A F +
Sbjct: 1284 RALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVN 1343
Query: 729 RSANMSAHELAHASHMYPDRIFGWRTVPTKVKD 827
R +N++AH LA + + ++ +P ++D
Sbjct: 1344 RLSNLAAHSLARNAELSTCTVYR-SVIPDYIRD 1375
Score = 29.6 bits (65), Expect(2) = 2e-18
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 136 QWLQQILTGQSCSMKAKITTLCWSIWRSRNDLVWNNRKWPVLRVVAKAWEYL 291
QW+ L S + W IW +RN+ NN RVV K Y+
Sbjct: 1148 QWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYV 1199