BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041849
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc...    90   2e-16
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...    89   3e-16
ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transc...    83   3e-14
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...    83   3e-14
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...    80   2e-13

>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 587

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 40/64 (62%), Positives = 53/64 (82%)
 Frame = -3

Query: 194 MTERQVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPSSFMKLNVEFRFIIGHKFSKE 15
           M+ RQV+KRAKYK+++KDPGTPGVL + +++FVF P+DP+S  KL+VEFRFI GHK +KE
Sbjct: 1   MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDKFVFKPNDPTSKTKLDVEFRFIQGHKVTKE 60

Query: 14  APNK 3
              K
Sbjct: 61  GSKK 64


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 604

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 40/60 (66%), Positives = 52/60 (86%)
 Frame = -3

Query: 194 MTERQVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPSSFMKLNVEFRFIIGHKFSKE 15
           M+ RQV+KRAKYK+++KDPGTPGVL + ++RFVF P+DP+S  KL+VEFRFI GHK +KE
Sbjct: 1   MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDRFVFKPNDPTSKTKLDVEFRFIQGHKVTKE 60


>ref|XP_004171236.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-3-like, partial [Cucumis sativus]
          Length = 220

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 41/64 (64%), Positives = 48/64 (75%)
 Frame = -3

Query: 194 MTERQVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPSSFMKLNVEFRFIIGHKFSKE 15
           M  + V K AKYK+S+KDPGTPGVL M   +FVF PSDP+S  KL+VEFRFI GHK +KE
Sbjct: 26  MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 85

Query: 14  APNK 3
             NK
Sbjct: 86  GSNK 89


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 41/64 (64%), Positives = 48/64 (75%)
 Frame = -3

Query: 194 MTERQVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPSSFMKLNVEFRFIIGHKFSKE 15
           M  + V K AKYK+S+KDPGTPGVL M   +FVF PSDP+S  KL+VEFRFI GHK +KE
Sbjct: 1   MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE 60

Query: 14  APNK 3
             NK
Sbjct: 61  GSNK 64


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = -3

Query: 182 QVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPSSFMKLNVEFRFIIGHKFSKEAPNK 3
           +V+KRA+YK+S+KD G  GVL M  ++FVFMP+DP+S  + +VEFRFI GHKFSK   NK
Sbjct: 4   EVLKRARYKTSVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGGSNK 63