BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041658
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD25830.1| putative retroelement pol polyprotein [Arabidopsi...    62   6e-08
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]    61   8e-08
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...    61   8e-08
emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera]    61   1e-07
dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana] g...    61   1e-07

>gb|AAD25830.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1015

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/93 (37%), Positives = 53/93 (56%)
 Frame = +3

Query: 3   NLEKRFSLTNGSRKYKLSKDLYELKQQSGSITEYYTSMKAVWEELDSLNMLPVVTAPNPE 182
           +L  RF +TN  R Y+LS+ ++ L+Q S  +  YYT++K +W ELD  N   V    N +
Sbjct: 103 DLATRFHITNLPRSYQLSQQIWSLQQGSMDLATYYTTLKTLWNELDGANC--VTVCKNCD 160

Query: 183 VVKLLDAIALQREESRLFQFLNGLDEQYHSQRS 281
             K   A+  + E +R+ +FL GL+E Y   RS
Sbjct: 161 CCK---AMETKSEHARVIKFLAGLNESYAVIRS 190


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +3

Query: 6   LEKRFSLTNGSRKYKLSKDLYELKQQSGSITEYYTSMKAVWEELDSLNMLPVVTAPNPEV 185
           ++++FS+ NG R  +L   L   KQ+   I  YY  +K++W+EL++ + +PV T    + 
Sbjct: 67  IKQQFSIGNGPRVQQLKSYLVNCKQEGQGIIVYYGKLKSLWDELNNYDSIPVCTCTRCK- 125

Query: 186 VKLLDAIALQREESRLFQFLNGLDEQ-YHSQRS 281
            K+   +  +REE R+ QFL GLDE  Y + RS
Sbjct: 126 CKITTQLEKKREEERVHQFLMGLDEDGYGTVRS 158


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/93 (35%), Positives = 58/93 (62%)
 Frame = +3

Query: 3   NLEKRFSLTNGSRKYKLSKDLYELKQQSGSITEYYTSMKAVWEELDSLNMLPVVTAPNPE 182
           +L+ RF +TN  R Y+L++ ++ L+Q + S+++YYT++K +W++LD  +   V T  N  
Sbjct: 158 DLDTRFHITNLPRSYQLTQQIWSLQQGTMSLSDYYTALKTLWDDLDGASC--VSTCKN-- 213

Query: 183 VVKLLDAIALQREESRLFQFLNGLDEQYHSQRS 281
                 A A   E S++ +FL+GL+E Y + RS
Sbjct: 214 -CTCCIATASMIEHSKIVKFLSGLNESYSTIRS 245


>emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera]
          Length = 1131

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/92 (36%), Positives = 54/92 (58%)
 Frame = +3

Query: 3   NLEKRFSLTNGSRKYKLSKDLYELKQQSGSITEYYTSMKAVWEELDSLNMLPVVTAPNPE 182
           +L +RFS  N SR Y++ +D+ E +Q   SI+ YYT +KA W+EL S + +   +    E
Sbjct: 112 DLRERFSQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVLSCSCGGLE 171

Query: 183 VVKLLDAIALQREESRLFQFLNGLDEQYHSQR 278
            +K +D      E+ R+ QFL GL++ Y + R
Sbjct: 172 KLKEMD------EKERVMQFLMGLNDSYAAIR 197


>dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana]
           gi|26450382|dbj|BAC42306.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|28973203|gb|AAO63926.1| unknown protein [Arabidopsis
           thaliana]
          Length = 357

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/93 (35%), Positives = 58/93 (62%)
 Frame = +3

Query: 3   NLEKRFSLTNGSRKYKLSKDLYELKQQSGSITEYYTSMKAVWEELDSLNMLPVVTAPNPE 182
           +L+ RF +TN  R Y+L++ ++ L+Q + S+++YYT++K +W++LD  +   V T  N  
Sbjct: 161 DLDTRFHITNLPRSYQLTQQIWSLQQGNMSLSDYYTTLKTLWDDLDGASC--VNTCRN-- 216

Query: 183 VVKLLDAIALQREESRLFQFLNGLDEQYHSQRS 281
             K   A A   E S++ +FL GL++ Y + RS
Sbjct: 217 -CKCCSATASVNEHSKIVKFLAGLNDFYSTIRS 248