BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041434
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containi...    63   3e-08
ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containi...    60   1e-07
ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata] g...    57   1e-06
ref|XP_003614153.1| Pentatricopeptide repeat-containing protein ...    57   2e-06
ref|NP_199839.1| pentatricopeptide repeat-containing protein [Ar...    57   2e-06

>ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
 Frame = +2

Query: 92  FLPHLQ----ENEQKDPVE------QDPLQPTHDPFLKFFQKRVSAPEPDPTREGKLTLQ 241
           FLP+LQ    EN +K+ +E      Q+      DP  KFF+ R      DP +EGKL+LQ
Sbjct: 63  FLPYLQQQEPENREKEGIETIVEEQQEQEHDPDDPIYKFFKTRTRFSSQDPGKEGKLSLQ 122

Query: 242 KNRRTSWHLAED 277
           KNRR SWHLA D
Sbjct: 123 KNRRISWHLASD 134


>ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
 Frame = +2

Query: 92  FLPHLQENEQKDP---------VEQDPLQPTHDPFLKFFQKRVSAPEPDPTREGKLTLQK 244
           FLP+L++ E ++          VE+    P  DP  KFF+ R      DP +EGKL+LQK
Sbjct: 57  FLPYLRQLEPENHEQGEGIETIVEEQEYDPD-DPIYKFFKTRTRFSSQDPGKEGKLSLQK 115

Query: 245 NRRTSWHLAEDSNAQGVEPD 304
           NRR SWHLA D   +  EP+
Sbjct: 116 NRRISWHLASDLIEEEEEPE 135


>ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
           gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 723

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +2

Query: 113 NEQKDPVEQDPLQPTHDPFLKFFQKRVSAPE--PDPTREGKLTLQKNRRTSWHLAEDSNA 286
           N++ +  E++      DP LKFF+ R    E   DP RE K +LQKNRRTSWHLA D   
Sbjct: 82  NQKDEDEEEEEGDDFTDPILKFFKSRTLTSELTQDPGRESKFSLQKNRRTSWHLASDFAD 141

Query: 287 QGVE 298
            G E
Sbjct: 142 PGTE 145


>ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355515488|gb|AES97111.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +2

Query: 92  FLPHLQENEQKDPVEQDPLQPTHDPFLKFFQKRVSAPEPDPTREGKLTLQKNRRTSWHLA 271
           FLP  +++EQ+   EQ+  +  HDP  KFF+ R      +P+ EGKL L+KNRR  WHLA
Sbjct: 57  FLPLFEQHEQE--AEQNE-KSNHDPIYKFFKNRTMVSSQNPSEEGKLLLRKNRRAKWHLA 113


>ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
           gi|9759030|dbj|BAB09399.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008538|gb|AED95921.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 723

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 34/71 (47%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +2

Query: 110 ENEQKDPVEQDPLQPTHDPFLKFFQKRVSAPEP--DPTREGKLTLQKNRRTSWHLAEDSN 283
           E E++D  E D      DP LKFF+ R    E   DP RE K +LQKNRRTSWHLA    
Sbjct: 84  ECEEEDDEEGDDFT---DPILKFFKSRTLTSESTADPARESKFSLQKNRRTSWHLA---- 136

Query: 284 AQGVEPDFSGP 316
                PDF+ P
Sbjct: 137 -----PDFADP 142