BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041286
         (1141 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2...   411   e-112
ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1...   407   e-111
dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoea nil]             407   e-111
ref|XP_002332364.1| GRAS family transcription factor [Populus tr...   393   e-107
dbj|BAH80549.1| transcription factor GRAS family protein [Eucaly...   392   e-107

>ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2 [Vitis vinifera]
          Length = 509

 Score =  411 bits (1057), Expect = e-112
 Identities = 225/360 (62%), Positives = 247/360 (68%), Gaps = 4/360 (1%)
 Frame = +1

Query: 73   MDTLFRLVSSTLQXXXXXXXXXXXXXXXXXXXHQNPPHYQVDEECFNVFMDEEDLSSSSS 252
            MDTLFRLVS                       H    H+Q DEECFN FMDEED SSSSS
Sbjct: 1    MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHH---HHQEDEECFNFFMDEEDFSSSSS 57

Query: 253  KH----NNNTYYPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYXXXXXXXXXXFETXX 420
            KH       T+  T+                           H            FE   
Sbjct: 58   KHYYPYQQQTHPSTTTTPTTTNTQTHPSTTTTPTTTNTSTPTHH----------AFEPTE 107

Query: 421  XXXXXXXXXXXLTLEFGSLVSGGKWASDILLEAARAIAEKNSTRLQQLIWMLNELSSPYG 600
                       L LEF S  SG KWAS+ILLE ARAIA+KNS R+QQL+WMLNELSSPYG
Sbjct: 108  FSFSPARD---LHLEFNSSASG-KWASEILLETARAIADKNSARVQQLMWMLNELSSPYG 163

Query: 601  DTEQKLASYFLQALFSRMTESGERSYRTLVSTSEKNCSFETTRKTVLKFQEVSPWTTFGH 780
            DT+QKLA+YFLQALFSRMT+SGER YRTL+S SEK CSFE+TRK VLKFQEVSPWTTFGH
Sbjct: 164  DTDQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGH 223

Query: 781  VACNGAIMEAFEGETKLHIIDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVASKSSGP 960
            VACNGAIMEA EGE+KLHIID SNTYCTQWPTLLEALATRTDETPHLRLTTVV SK+   
Sbjct: 224  VACNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAGTG 283

Query: 961  GTAAVHKVMREIGNRMEKFARLMGVPFKFNIIHHTGDLSQLNLSELDIKEDEAIAVNCVG 1140
            G A V K+M+EIGNRMEKFARLMGVPFKFN++HH+GDLS LNL+ELDIK+DEA+AVNCVG
Sbjct: 284  GMAPVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVG 343


>ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1 [Vitis vinifera]
          Length = 494

 Score =  407 bits (1047), Expect = e-111
 Identities = 224/365 (61%), Positives = 248/365 (67%), Gaps = 9/365 (2%)
 Frame = +1

Query: 73   MDTLFRLVSSTLQXXXXXXXXXXXXXXXXXXXHQNPPHYQVDEECFNVFMDEEDLSSSSS 252
            MDTLFRLVS                       H    H+Q DEECFN FMDEED SSSSS
Sbjct: 1    MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHH---HHQEDEECFNFFMDEEDFSSSSS 57

Query: 253  K---------HNNNTYYPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYXXXXXXXXXX 405
            K         H + T  PT+                           H +          
Sbjct: 58   KHYYPYQQQTHPSTTTTPTTTNTSTPTH-------------------HAFEPTEFSFSPA 98

Query: 406  FETXXXXXXXXXXXXXLTLEFGSLVSGGKWASDILLEAARAIAEKNSTRLQQLIWMLNEL 585
             +              L LEF S  SG KWAS+ILLE ARAIA+KNS R+QQL+WMLNEL
Sbjct: 99   RD--------------LHLEFNSSASG-KWASEILLETARAIADKNSARVQQLMWMLNEL 143

Query: 586  SSPYGDTEQKLASYFLQALFSRMTESGERSYRTLVSTSEKNCSFETTRKTVLKFQEVSPW 765
            SSPYGDT+QKLA+YFLQALFSRMT+SGER YRTL+S SEK CSFE+TRK VLKFQEVSPW
Sbjct: 144  SSPYGDTDQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPW 203

Query: 766  TTFGHVACNGAIMEAFEGETKLHIIDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVAS 945
            TTFGHVACNGAIMEA EGE+KLHIID SNTYCTQWPTLLEALATRTDETPHLRLTTVV S
Sbjct: 204  TTFGHVACNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTS 263

Query: 946  KSSGPGTAAVHKVMREIGNRMEKFARLMGVPFKFNIIHHTGDLSQLNLSELDIKEDEAIA 1125
            K+   G A V K+M+EIGNRMEKFARLMGVPFKFN++HH+GDLS LNL+ELDIK+DEA+A
Sbjct: 264  KAGTGGMAPVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALA 323

Query: 1126 VNCVG 1140
            VNCVG
Sbjct: 324  VNCVG 328


>dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoea nil]
          Length = 505

 Score =  407 bits (1046), Expect = e-111
 Identities = 219/360 (60%), Positives = 250/360 (69%), Gaps = 4/360 (1%)
 Frame = +1

Query: 73   MDTLFRLVSSTLQXXXXXXXXXXXXXXXXXXXHQNPPHYQVDEECFNVFMDEEDLSSSSS 252
            MDTLFRLVS  LQ                   H N  H+Q DEECFN FMDE+D SSSSS
Sbjct: 1    MDTLFRLVS--LQQSDQSFNSSRTSSSSRCSRHNNYHHHQEDEECFNFFMDEDDFSSSSS 58

Query: 253  KHNNNTYYPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYXXXXXXXXXXFETXXXXXX 432
            KH    Y P+S                           H Y                   
Sbjct: 59   KH---PYPPSSSSYHHHHHQYQQFSNTPTPTTTSSTPPHSYSHPQPTFDP---------- 105

Query: 433  XXXXXXXLTLEFGSLVSGGKWASDILLEAARAIAEKNSTRLQQLIWMLNELSSPYGDTEQ 612
                     LEFGS  SG KWA++IL+E ARA+AEKNS R+QQL+WMLNELSSPYGDT+Q
Sbjct: 106  --------NLEFGSAFSG-KWATEILVETARAVAEKNSGRVQQLMWMLNELSSPYGDTDQ 156

Query: 613  KLASYFLQALFSRMTESGERSYRTLVSTSEKNCSFETTRKTVLKFQEVSPWTTFGHVACN 792
            KLA+YFLQALFSRMT++G+R+YR+LVS S+K CSFE+TRK VLKFQEVSPWTTFGHVACN
Sbjct: 157  KLAAYFLQALFSRMTDTGDRTYRSLVSASDKTCSFESTRKMVLKFQEVSPWTTFGHVACN 216

Query: 793  GAIMEAFEGETKLHIIDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVASKSSG----P 960
            GAIMEAFEGE+KLHI+D SNT+CTQWPTLLEALATRTDETPHLRLTTVV +K+ G     
Sbjct: 217  GAIMEAFEGESKLHIVDISNTFCTQWPTLLEALATRTDETPHLRLTTVVVNKAFGGGGSG 276

Query: 961  GTAAVHKVMREIGNRMEKFARLMGVPFKFNIIHHTGDLSQLNLSELDIKEDEAIAVNCVG 1140
            G A++ KVM+EIGNRMEKF RLMGVPFKFN+IHH+GDLS L+LS LDIKEDEA+A+N VG
Sbjct: 277  GAASIQKVMKEIGNRMEKFGRLMGVPFKFNVIHHSGDLSDLDLSALDIKEDEALAINSVG 336


>ref|XP_002332364.1| GRAS family transcription factor [Populus trichocarpa]
            gi|222874681|gb|EEF11812.1| GRAS family transcription
            factor [Populus trichocarpa]
          Length = 510

 Score =  393 bits (1009), Expect = e-107
 Identities = 218/368 (59%), Positives = 240/368 (65%), Gaps = 12/368 (3%)
 Frame = +1

Query: 73   MDTLFRLVSSTLQXXXXXXXXXXXXXXXXXXXHQNPPHY----QVDEECFNVFMDEEDLS 240
            MDTLFRLVS   Q                     N  H+    Q DEECFN FMDEED S
Sbjct: 1    MDTLFRLVSLQQQSEQSFNSTSRTSSSSRSSRQNNNHHHHHYQQEDEECFNFFMDEEDFS 60

Query: 241  SSSSKHNNNTYYPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYXXXXXXXXXXFETXX 420
             SSS  +    Y  +                           H             +   
Sbjct: 61   -SSSSKHYYPPYHHNQQQQHQHQTTTTTPTTTTTNTSTPSTHHVLDSADFSFSPSHD--- 116

Query: 421  XXXXXXXXXXXLTLEFGSLVSGGKWASDILLEAARAIAEKNSTRLQQLIWMLNELSSPYG 600
                       L  EF      GKW +DILLE+A AIA+KNS RLQQL+WMLNEL SPYG
Sbjct: 117  -----------LNFEFS-----GKWVTDILLESAHAIADKNSARLQQLMWMLNELGSPYG 160

Query: 601  DTEQKLASYFLQALFSRMTESGERSYRTLVSTSEKNCSFETTRKTVLKFQEVSPWTTFGH 780
            DTEQKLASYFLQALFSRM +SGER YRTL S SEK CSF++TRK VLKFQEVSPWTTFGH
Sbjct: 161  DTEQKLASYFLQALFSRMNDSGERCYRTLASASEKTCSFDSTRKMVLKFQEVSPWTTFGH 220

Query: 781  VACNGAIMEAFEGETKLHIIDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVASKSSG- 957
            V+CNGAIMEAFEGE+KLHIID SNTYCTQWPTLLEALATRTDETPHL+LTTVVASKSSG 
Sbjct: 221  VSCNGAIMEAFEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLKLTTVVASKSSGN 280

Query: 958  -------PGTAAVHKVMREIGNRMEKFARLMGVPFKFNIIHHTGDLSQLNLSELDIKEDE 1116
                    G A+VHKVM+EIGNRMEKFARLMGVPFKFN+IHH GDL  LNL+ELD+K+DE
Sbjct: 281  NIGLTSTGGLASVHKVMKEIGNRMEKFARLMGVPFKFNVIHHAGDLCDLNLAELDVKDDE 340

Query: 1117 AIAVNCVG 1140
            A+A+NCVG
Sbjct: 341  ALAINCVG 348


>dbj|BAH80549.1| transcription factor GRAS family protein [Eucalyptus grandis]
          Length = 494

 Score =  392 bits (1008), Expect = e-107
 Identities = 210/360 (58%), Positives = 239/360 (66%), Gaps = 4/360 (1%)
 Frame = +1

Query: 73   MDTLFRLVSSTLQXXXXXXXXXXXXXXXXXXXHQNPPHYQVDEECFNVFMDEEDLSSSSS 252
            MDTLFRLVS                       H      + DEEC N+FMDEED SSSSS
Sbjct: 1    MDTLFRLVSLQSSDQSFNSSRTSSSSRSSRQNHHYHHQPEADEECLNIFMDEEDFSSSSS 60

Query: 253  KHNNNTYYPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXHQYXXXXXXXXXXFETXXXXXX 432
            KH +  Y+P +                                          T      
Sbjct: 61   KHYSYPYHPATTSTTPTTTSSTHTP---------------------------HTYDPADV 93

Query: 433  XXXXXXXLTLEFGSLVSGGKWASDILLEAARAIAEKNSTRLQQLIWMLNELSSPYGDTEQ 612
                   L  +F S     KWASDILLE ARAI +KNSTR+Q L+WMLNEL SPYGD EQ
Sbjct: 94   SVSPARDLNFDFSS-----KWASDILLETARAIVDKNSTRVQHLMWMLNELCSPYGDIEQ 148

Query: 613  KLASYFLQALFSRMTESGERSYRTLVSTSEKNCSFETTRKTVLKFQEVSPWTTFGHVACN 792
            KLASYFLQALFSRMT+SGERSY   ++ S+K CSFE+TRK VLKFQEVSPWTTFGHVACN
Sbjct: 149  KLASYFLQALFSRMTDSGERSYSAWLAASDKTCSFESTRKMVLKFQEVSPWTTFGHVACN 208

Query: 793  GAIMEAFEGETKLHIIDFSNTYCTQWPTLLEALATRTDETPHLRLTTVVASKSSG----P 960
            GA+MEA EGE+KLHI+D SNTYCTQWPTLLEALATRTDETPHLRLTTVV SK++G     
Sbjct: 209  GAMMEALEGESKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVSKANGGAETS 268

Query: 961  GTAAVHKVMREIGNRMEKFARLMGVPFKFNIIHHTGDLSQLNLSELDIKEDEAIAVNCVG 1140
            G AAV KVM+EIG+RMEKFARLMGVPFKF++++H+GDLS+LNL ELDIKEDEA+A+NCVG
Sbjct: 269  GVAAVQKVMKEIGSRMEKFARLMGVPFKFSVLYHSGDLSELNLDELDIKEDEALAINCVG 328