BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041115
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...    65   2e-18
gb|AAP43914.1| integrase [Gossypium raimondii]                         65   2e-18
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]      64   3e-18
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...    64   3e-18
gb|AAP43919.1| integrase [Gossypium hirsutum]                          65   3e-18

>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 65.1 bits (157), Expect(2) = 2e-18
 Identities = 23/51 (45%), Positives = 39/51 (76%)
 Frame = -1

Query: 339  HYLIQREFILFTDHQALKFLHSQKVINKMHARWVSFLQKFPFIIQHKSGTQ 187
            HYL  +EF++ +DH++LK + SQ  +N+ HA+WV F++ FP++I+HK G +
Sbjct: 1048 HYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKE 1098



 Score = 52.4 bits (124), Expect(2) = 2e-18
 Identities = 22/62 (35%), Positives = 38/62 (61%)
 Frame = -2

Query: 188  NKVANALSRRASFCVTFEHEILGFELLKELYSGDAEFKDLWVKCNRNHPFADFHVRDGYM 9
            N +ANALSRR +     +++I G E +K+ Y+ DA+F D+ + C     +  F + DG++
Sbjct: 1099 NIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFV 1158

Query: 8    FK 3
            F+
Sbjct: 1159 FR 1160


>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score = 65.1 bits (157), Expect(2) = 2e-18
 Identities = 25/49 (51%), Positives = 38/49 (77%)
 Frame = -1

Query: 339 HYLIQREFILFTDHQALKFLHSQKVINKMHARWVSFLQKFPFIIQHKSG 193
           HYL+++EF++ TDH++LK L  Q  +NK HARWV F++ FP+ I++K G
Sbjct: 40  HYLLRKEFVIHTDHESLKHLKGQGKLNKRHARWVEFIESFPYGIRYKKG 88



 Score = 52.4 bits (124), Expect(2) = 2e-18
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = -2

Query: 188 NKVANALSRRASFCVTFEHEILGFELLKELYSGDAEFKDLWVKCNRNHPFADFHVRDGYM 9
           N VA+ALSRR +   T   ++LGFE LK+LY+ D++F  ++  C     F  F+  DGY+
Sbjct: 91  NIVADALSRRYTLLSTLHTKLLGFEYLKDLYATDSDFASIYDACEHG-AFHKFYKHDGYL 149

Query: 8   FK 3
           F+
Sbjct: 150 FQ 151


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 63.9 bits (154), Expect(2) = 3e-18
 Identities = 22/51 (43%), Positives = 39/51 (76%)
 Frame = -1

Query: 339  HYLIQREFILFTDHQALKFLHSQKVINKMHARWVSFLQKFPFIIQHKSGTQ 187
            HYL  +EF++ +DH+ALK+L  Q  +N+ HA+WV F++ FP+++++K G +
Sbjct: 1072 HYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKE 1122



 Score = 52.8 bits (125), Expect(2) = 3e-18
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = -2

Query: 188  NKVANALSRRASFCVTFEHEILGFELLKELYSGDAEFKDLWVKCNRNHPFADFHVRDGYM 9
            N VA+ALSR+       E ++ G E +KELYS D +F + + KC     +  +H+ DG++
Sbjct: 1123 NIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFL 1182

Query: 8    FK 3
            F+
Sbjct: 1183 FR 1184


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score = 63.9 bits (154), Expect(2) = 3e-18
 Identities = 22/51 (43%), Positives = 39/51 (76%)
 Frame = -1

Query: 339 HYLIQREFILFTDHQALKFLHSQKVINKMHARWVSFLQKFPFIIQHKSGTQ 187
           HYL  +EF++ +DH+ALK+L  Q  +N+ HA+WV F++ FP+++++K G +
Sbjct: 40  HYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKE 90



 Score = 52.8 bits (125), Expect(2) = 3e-18
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = -2

Query: 188 NKVANALSRRASFCVTFEHEILGFELLKELYSGDAEFKDLWVKCNRNHPFADFHVRDGYM 9
           N VA+ALSR+       E ++ G E +KELYS D +F + + KC     +  +H+ DG++
Sbjct: 91  NIVADALSRKNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFL 150

Query: 8   FK 3
           F+
Sbjct: 151 FR 152


>gb|AAP43919.1| integrase [Gossypium hirsutum]
          Length = 334

 Score = 64.7 bits (156), Expect(2) = 3e-18
 Identities = 25/49 (51%), Positives = 38/49 (77%)
 Frame = -1

Query: 339 HYLIQREFILFTDHQALKFLHSQKVINKMHARWVSFLQKFPFIIQHKSG 193
           HYL+  EF++ TDH++LK+L  Q  ++K HARWV F++ FP++IQ+K G
Sbjct: 40  HYLLPNEFVIHTDHESLKWLKGQGKLSKRHARWVEFIETFPYMIQYKIG 88



 Score = 51.6 bits (122), Expect(2) = 3e-18
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = -2

Query: 188 NKVANALSRRASFCVTFEHEILGFELLKELYSGDAEFKDLWVKCNRNHPFADFHVRDGYM 9
           N VA+ALSRR +   T   ++LGFE +KELY  D +F  ++  C     F  F++ DG +
Sbjct: 91  NVVADALSRRYTLITTLNAKVLGFEHIKELYDDDTDFSHIYKNCGHT-AFEKFYLVDGLL 149

Query: 8   FK 3
           F+
Sbjct: 150 FR 151