BLASTX nr result
ID: Cnidium21_contig00041068
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00041068
(509 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABF94034.1| retrotransposon protein, putative, unclassified [... 182 2e-47
gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indi... 182 3e-47
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]... 181 9e-47
emb|CAE04421.2| OSJNBb0040D15.11 [Oryza sativa Japonica Group] 179 3e-46
ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group] g... 179 4e-46
>gb|ABF94034.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1409
Score = 182 bits (462), Expect(2) = 2e-47
Identities = 83/145 (57%), Positives = 112/145 (77%)
Frame = +1
Query: 73 IVSQYMERPA*LHLNAVKRICRYVKGTLHYGLAYTKGRGNYILSGFSNSDLAGSMDDRKS 252
+ S++MERP +H AVK+I RY+KGT+ YGL Y G G ++G+++SDLAG +DDR+S
Sbjct: 1208 VASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRS 1267
Query: 253 T*GMAFYLDENLITWVSQKQRCVALSSCEAEFMATTAAACQAIWLQRVLIHIIDVKPGPV 432
T GMAFY++++L+ W SQKQ+ VALSSCEAEFMA T AACQA+WL+ +L + V+ V
Sbjct: 1268 TGGMAFYINQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAV 1327
Query: 433 TLYIDNMSAVDLARNPVFHGRSKHI 507
L++DN SA+ L +NPVFHGRSKHI
Sbjct: 1328 KLFVDNRSAIALMKNPVFHGRSKHI 1352
Score = 32.0 bits (71), Expect(2) = 2e-47
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 5 MVGGL*YLVHTRPDIAYAV 61
++G L YL+HTRPD++YAV
Sbjct: 1188 IIGSLRYLLHTRPDLSYAV 1206
>gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indica Group]
Length = 1427
Score = 182 bits (463), Expect(2) = 3e-47
Identities = 85/145 (58%), Positives = 113/145 (77%)
Frame = +1
Query: 73 IVSQYMERPA*LHLNAVKRICRYVKGTLHYGLAYTKGRGNYILSGFSNSDLAGSMDDRKS 252
+ S++MERP +HL AVK I RY+KGTL GL + G G+ ++GF++SDLAG MDDR+S
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285
Query: 253 T*GMAFYLDENLITWVSQKQRCVALSSCEAEFMATTAAACQAIWLQRVLIHIIDVKPGPV 432
T GMAFY++ +L++W SQKQ+ VALSSCEAEFMA TAAAC A+WL+ +L ++ + PV
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPV 1345
Query: 433 TLYIDNMSAVDLARNPVFHGRSKHI 507
L++DN SA+ L +NPVFHGRSKHI
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHI 1370
Score = 30.8 bits (68), Expect(2) = 3e-47
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 5 MVGGL*YLVHTRPDIAYAV 61
++G L YL+HTRPD++YAV
Sbjct: 1206 VIGCLRYLLHTRPDLSYAV 1224
>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108710383|gb|ABF98178.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1339
Score = 181 bits (459), Expect(2) = 9e-47
Identities = 85/145 (58%), Positives = 113/145 (77%)
Frame = +1
Query: 73 IVSQYMERPA*LHLNAVKRICRYVKGTLHYGLAYTKGRGNYILSGFSNSDLAGSMDDRKS 252
+ S++MERP +H AVK+I RY+KGT++ GL ++ G G ++GF++SDLAG DDR+S
Sbjct: 1141 VASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRS 1200
Query: 253 T*GMAFYLDENLITWVSQKQRCVALSSCEAEFMATTAAACQAIWLQRVLIHIIDVKPGPV 432
T GMAFY + +L++W SQKQ+ VALSSCEAEFMA TAAAC A+WL+ +LI +I + PV
Sbjct: 1201 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 1260
Query: 433 TLYIDNMSAVDLARNPVFHGRSKHI 507
LY+DN SA+ L +NPVFHGRSKHI
Sbjct: 1261 KLYVDNKSAIALMKNPVFHGRSKHI 1285
Score = 30.8 bits (68), Expect(2) = 9e-47
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 5 MVGGL*YLVHTRPDIAYAV 61
++G L YL+HTRPD++YAV
Sbjct: 1121 VIGCLRYLLHTRPDLSYAV 1139
>emb|CAE04421.2| OSJNBb0040D15.11 [Oryza sativa Japonica Group]
Length = 346
Score = 179 bits (454), Expect(2) = 3e-46
Identities = 84/145 (57%), Positives = 113/145 (77%)
Frame = +1
Query: 73 IVSQYMERPA*LHLNAVKRICRYVKGTLHYGLAYTKGRGNYILSGFSNSDLAGSMDDRKS 252
+VS++MERP +H A+K+I RY+KGT++ GL ++ G G ++GF++SDLAG DD +S
Sbjct: 148 VVSRFMERPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRS 207
Query: 253 T*GMAFYLDENLITWVSQKQRCVALSSCEAEFMATTAAACQAIWLQRVLIHIIDVKPGPV 432
T GMAFY + +L++W SQKQ+ VALSSCEAEFMA TAAAC A+WL+ +LI +I + PV
Sbjct: 208 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 267
Query: 433 TLYIDNMSAVDLARNPVFHGRSKHI 507
LY+DN SA+ L +NPVFHGRSKHI
Sbjct: 268 KLYVDNKSAIALMKNPVFHGRSKHI 292
Score = 31.2 bits (69), Expect(2) = 3e-46
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 5 MVGGL*YLVHTRPDIAYAV 61
++G L YL+HTRPD++YAV
Sbjct: 128 LIGCLRYLLHTRPDLSYAV 146
>ref|NP_001060895.1| Os08g0125300 [Oryza sativa Japonica Group]
gi|113622864|dbj|BAF22809.1| Os08g0125300 [Oryza sativa
Japonica Group] gi|215701150|dbj|BAG92574.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 1427
Score = 179 bits (454), Expect(2) = 4e-46
Identities = 84/145 (57%), Positives = 112/145 (77%)
Frame = +1
Query: 73 IVSQYMERPA*LHLNAVKRICRYVKGTLHYGLAYTKGRGNYILSGFSNSDLAGSMDDRKS 252
+ S++MERP +HL AVK I RY+KGTL GL + G G+ ++GF++SDLAG MDDR+S
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285
Query: 253 T*GMAFYLDENLITWVSQKQRCVALSSCEAEFMATTAAACQAIWLQRVLIHIIDVKPGPV 432
T GMAFY++ +L++W SQKQ+ VALSSCEAEFMA TAAAC A+WL+ +L ++ + V
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRV 1345
Query: 433 TLYIDNMSAVDLARNPVFHGRSKHI 507
L++DN SA+ L +NPVFHGRSKHI
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHI 1370
Score = 30.8 bits (68), Expect(2) = 4e-46
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 5 MVGGL*YLVHTRPDIAYAV 61
++G L YL+HTRPD++YAV
Sbjct: 1206 VIGCLRYLLHTRPDLSYAV 1224