BLASTX nr result

ID: Cnidium21_contig00041033 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00041033
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280902.1| PREDICTED: uncharacterized WD repeat-contain...    73   3e-11
ref|XP_003526921.1| PREDICTED: U5 small nuclear ribonucleoprotei...    64   1e-08
ref|XP_004145140.1| PREDICTED: uncharacterized protein LOC101220...    64   2e-08
ref|XP_002321752.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
ref|XP_003602749.1| WD repeat-containing protein, putative [Medi...    62   4e-08

>ref|XP_002280902.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466
           [Vitis vinifera] gi|297734510|emb|CBI15757.3| unnamed
           protein product [Vitis vinifera]
          Length = 526

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/77 (41%), Positives = 58/77 (75%)
 Frame = +3

Query: 45  QVLLALIDHRTKQVETCKSRLVHYTAELEQSKRKLEETKNQLSRLRGQHNVLASREISEH 224
           + L+ALI+HRTK+VE  + R+ +Y ++L+++++KL +++ QL RLR + N+++SR   ++
Sbjct: 30  EALVALIEHRTKEVEHIRKRITYYQSQLQEAEKKLLDSQAQLGRLRSKDNLVSSRSPLDN 89

Query: 225 GMVNIKVEKGSTSPYQI 275
           G   +KVE+ STSP Q+
Sbjct: 90  GTKKVKVERRSTSPLQL 106


>ref|XP_003526921.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like
           [Glycine max]
          Length = 533

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 16/135 (11%)
 Frame = +3

Query: 45  QVLLALIDHRTKQVETCKSRLVHYTAELEQSKRKLEETKNQLSRLRGQHNVLASREISEH 224
           + L+ALI+HRT +V+  + R+ +Y  +L++++++L++++++L+RLRGQ   ++SR   + 
Sbjct: 18  EALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLARLRGQ--TVSSRSTLDD 75

Query: 225 GMVNIKVEKGSTSPYQ----------------IIPHSPENQTRSVLEPLQGSVKSSKKSE 356
           G+  +K E+ S SP                  +IP +    ++ VL P   S  S   S 
Sbjct: 76  GIKTLKTERRSNSPIDRNEGSTKNRHQSKPELLIPSANPKISQPVLLPKSFSKASITSSS 135

Query: 357 VDAKGVSGGPVIQNS 401
               GV   P+   S
Sbjct: 136 EATPGVHSSPITGGS 150


>ref|XP_004145140.1| PREDICTED: uncharacterized protein LOC101220523 [Cucumis sativus]
           gi|449473874|ref|XP_004154008.1| PREDICTED:
           uncharacterized protein LOC101207060 [Cucumis sativus]
           gi|449523433|ref|XP_004168728.1| PREDICTED:
           uncharacterized LOC101207060 [Cucumis sativus]
          Length = 524

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 53/69 (76%)
 Frame = +3

Query: 45  QVLLALIDHRTKQVETCKSRLVHYTAELEQSKRKLEETKNQLSRLRGQHNVLASREISEH 224
           + L+ALIDHR  +V+  K R+ +YT++LE+++++L++T+++L+RLR Q N ++S++    
Sbjct: 19  EALVALIDHRCHEVQNLKHRVSYYTSQLEEAQKRLQDTESKLARLRRQSNAVSSKDSLRS 78

Query: 225 GMVNIKVEK 251
             V++KVE+
Sbjct: 79  RAVSVKVEQ 87


>ref|XP_002321752.1| predicted protein [Populus trichocarpa] gi|222868748|gb|EEF05879.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/116 (31%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = +3

Query: 51  LLALIDHRTKQVETCKSRLVHYTAELEQSKRKLEETKNQLSRLRGQHNVLASREIS-EHG 227
           L+ALI+HR++ ++  K R+ +Y  +L +++++LEE++ +L RL G+ N  A  + S E+G
Sbjct: 8   LIALIEHRSRVLQHLKQRVSYYQTQLVEAEKRLEESQVKLGRLSGKGNATAPNKPSVENG 67

Query: 228 MVNIKVEKGSTSPYQIIPHSPENQTRSVLEPLQGSVKSSKKSEVDAKGVSGGPVIQ 395
           + N+KVE+ S SP ++   SP +Q       ++   KS+   +V+    S  P ++
Sbjct: 68  IKNVKVERKSPSPVRVNEASPGSQPHVADVKVE---KSNSDVKVERSHKSSSPDVE 120


>ref|XP_003602749.1| WD repeat-containing protein, putative [Medicago truncatula]
           gi|355491797|gb|AES73000.1| WD repeat-containing
           protein, putative [Medicago truncatula]
          Length = 517

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 19/140 (13%)
 Frame = +3

Query: 45  QVLLALIDHRTKQVETCKSRLVHYTAELEQSKRKLEETKNQLSRLRGQHNVLASREISEH 224
           + L+ALI+HRT++V   + RL +   +L+ ++++L++++++L+RLRGQ     +    ++
Sbjct: 16  EALVALIEHRTREVNNLRHRLAYTKNQLDDAEKRLKDSESKLARLRGQTTKKITNSDDDN 75

Query: 225 GMVNIKVEKGSTSPYQIIPHSPENQTRSVLEPL-------------QGSVKSSKKSEVDA 365
           G V +K E+ S SP      S ++  +S  E +             +GSV     S V  
Sbjct: 76  GTVAVKKERRSNSPIDRNERSYKSNKQSKTELVIPAVTPKISRSSGKGSVSEVAVSSVHT 135

Query: 366 KGVSGGPVI------QNSEG 407
             VSGG  +      QN EG
Sbjct: 136 SSVSGGKSVKSKIDQQNVEG 155


Top