BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00040756
         (496 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containi...   268   3e-70
ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|2...   260   9e-68
ref|XP_002868248.1| pentatricopeptide repeat-containing protein ...   254   4e-66
ref|XP_003610734.1| Pentatricopeptide repeat-containing protein ...   252   2e-65
ref|NP_193218.1| pentatricopeptide repeat-containing protein [Ar...   250   1e-64

>ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed
           protein product [Vitis vinifera]
          Length = 727

 Score =  268 bits (686), Expect = 3e-70
 Identities = 123/165 (74%), Positives = 146/165 (88%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CGSLE AR +F  M +K VI+WT MISA AMHGDA +AL+ F QM+ EN+EPNG+TFVGV
Sbjct: 403 CGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGV 462

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           LYACSHAGLVEEGRK+F SM++E+ ITPKH HYGCMVDL+GRANLL EAL+L+E+MP AP
Sbjct: 463 LYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAP 522

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDGAHVLLSNI 496
           NV+IWGSLM+AC++HGE ELGEFAAK+LL+LDP+HDGAHV LSNI
Sbjct: 523 NVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNI 567



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/136 (30%), Positives = 74/136 (54%)
 Frame = +2

Query: 5   GSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGVL 184
           G +E+AR VF  M +K ++ W+ MIS  A       AL +F +M+S  ++P+ VT + V+
Sbjct: 303 GQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVI 362

Query: 185 YACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAPN 364
            AC+H G +++  K     VD+ G          ++++Y +   L  A ++ + MP   N
Sbjct: 363 TACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP-RKN 420

Query: 365 VVIWGSLMSACKIHGE 412
           V+ W  ++SA  +HG+
Sbjct: 421 VISWTCMISAFAMHGD 436



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 46/152 (30%), Positives = 73/152 (48%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG + +AR +F  M  + V+TW+ MI      G  N+AL +F++MK+ NVEP+ +    V
Sbjct: 170 CGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTV 229

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           L AC  AG +  G K+    + E  I         +V +Y     +  AL L E M    
Sbjct: 230 LSACGRAGNLSYG-KMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMT-PK 287

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLD 457
           N+V   ++++     G+ E       Q++K D
Sbjct: 288 NLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319


>ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  260 bits (664), Expect = 9e-68
 Identities = 122/165 (73%), Positives = 146/165 (88%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG+L  AR VF  M+ + VI+WT+MI+A A+HGDA+NALK F QMK EN++PNGVTFVGV
Sbjct: 128 CGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGV 187

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           LYACSHAGLVEEGR+ FASM +E+ ITPKHEHYGCMVDL+GRANLL +AL+L+E+MP AP
Sbjct: 188 LYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAP 247

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDGAHVLLSNI 496
           NVVIWGSLM+AC+IHGE ELGEFAAKQ+L+L+P+HDGA V LSNI
Sbjct: 248 NVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNI 292



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/136 (31%), Positives = 74/136 (54%)
 Frame = +2

Query: 5   GSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGVL 184
           G +EDAR +F  M +K ++ W+ MIS  A       AL +F +M+   ++P+ VT + V+
Sbjct: 28  GRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVI 87

Query: 185 YACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAPN 364
            AC+  G+++   K     VD+ G+         ++D+Y +   LG A  + E M  + N
Sbjct: 88  SACARLGVLDRA-KWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQ-SRN 145

Query: 365 VVIWGSLMSACKIHGE 412
           V+ W S+++A  IHG+
Sbjct: 146 VISWTSMINAFAIHGD 161


>ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314084|gb|EFH44507.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 725

 Score =  254 bits (650), Expect = 4e-66
 Identities = 118/165 (71%), Positives = 144/165 (87%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG L+ AR+VF  M  + V++W++MI+A AMHG+A+++L +F QMK ENVEPN VTFVGV
Sbjct: 395 CGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGV 454

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           LY CSH+GLVEEG+K+FASM DEY ITPK EHYGCMVDL+GRANLL EAL++IESMP AP
Sbjct: 455 LYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAP 514

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDGAHVLLSNI 496
           NVVIWGSLMSAC++HGE ELGE AAK++LKL+P+HDGA VL+SNI
Sbjct: 515 NVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNI 559



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
 Frame = +2

Query: 5   GSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGVL 184
           G L+DAR +F     K ++ WTTMISA A       AL++F++M    ++P+ VT + V+
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354

Query: 185 YACSHAGLVEEGRKLFASMVDEY----GITPKHEHYGCMVDLYGRANLLGEALQLIESMP 352
            AC + G +++     A  V  Y    G+         ++++Y +   L  A  + E MP
Sbjct: 355 SACVNLGTLDK-----AKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMP 409

Query: 353 FAPNVVIWGSLMSACKIHGE 412
              NVV W S+++A  +HGE
Sbjct: 410 -TRNVVSWSSMINAFAMHGE 428



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 55/116 (47%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG +  AR VF  M Q+ V+TW TMI      G  + A K+F++MK  NV P+ +    +
Sbjct: 162 CGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNI 221

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESM 349
           + AC   G +   R ++  ++ E  +         +V +Y  A  +  A++    M
Sbjct: 222 VSACGRTGNMRYNRAIYDFLI-ENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKM 276


>ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512069|gb|AES93692.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  252 bits (644), Expect = 2e-65
 Identities = 115/165 (69%), Positives = 148/165 (89%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG+L  AREVF +M +K VI+W++MI+A AMHG+A++A+K+F++MK  N+EPNGVTF+GV
Sbjct: 402 CGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGV 461

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           LYAC HAGLVEEG KLF+SM++E+GI+P  EHYGCMVDLY RAN L +A++LIE+MPFAP
Sbjct: 462 LYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAP 521

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDGAHVLLSNI 496
           NV+IWGSLMSAC++HGE ELGEFAAK+LL+L+P+HDGA V+LSNI
Sbjct: 522 NVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNI 566



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/156 (27%), Positives = 83/156 (53%)
 Frame = +2

Query: 5   GSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGVL 184
           G ++DAR +F  M ++ ++ W+ MIS  A       ALK+F +M  +   P+ +T + V+
Sbjct: 302 GMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361

Query: 185 YACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAPN 364
            ACSH G + +   +  + VD  G          ++D+Y +   L +A ++ E+MP   N
Sbjct: 362 SACSHVGALAQANWIH-TYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP-RKN 419

Query: 365 VVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDG 472
           V+ W S+++A  +HG  +      +++ +++ E +G
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/152 (22%), Positives = 73/152 (48%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           C  + DAR +F  M     + W  +I     +G  ++AL++F+ M+S +++P+ V    V
Sbjct: 169 CRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTV 228

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           L AC HAG +  GR +    V + G          ++++Y     +  A ++ + +  + 
Sbjct: 229 LSACGHAGNLSYGRTIH-EFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLS-SK 286

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLD 457
           ++++  +++S     G  +   F   Q+++ D
Sbjct: 287 HLIVSTAMLSGYAKLGMVKDARFIFDQMIERD 318


>ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274931|sp|O23337.1|PP311_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14820 gi|2244839|emb|CAB10261.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|7268228|emb|CAB78524.1| hypothetical protein
           [Arabidopsis thaliana] gi|332658106|gb|AEE83506.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 722

 Score =  250 bits (638), Expect = 1e-64
 Identities = 116/165 (70%), Positives = 145/165 (87%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG L+  R+VF  M ++ V++W++MI+AL+MHG+A++AL +F +MK ENVEPN VTFVGV
Sbjct: 392 CGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGV 451

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           LY CSH+GLVEEG+K+FASM DEY ITPK EHYGCMVDL+GRANLL EAL++IESMP A 
Sbjct: 452 LYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVAS 511

Query: 362 NVVIWGSLMSACKIHGEYELGEFAAKQLLKLDPEHDGAHVLLSNI 496
           NVVIWGSLMSAC+IHGE ELG+FAAK++L+L+P+HDGA VL+SNI
Sbjct: 512 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNI 556



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/137 (29%), Positives = 75/137 (54%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG L+DA+ +F    +K ++ WTTMISA         AL++F++M    ++P+ V+   V
Sbjct: 291 CGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSV 350

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESMPFAP 361
           + AC++ G++++  K   S +   G+  +      ++++Y +   L     + E MP   
Sbjct: 351 ISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RR 408

Query: 362 NVVIWGSLMSACKIHGE 412
           NVV W S+++A  +HGE
Sbjct: 409 NVVSWSSMINALSMHGE 425



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/116 (27%), Positives = 53/116 (45%)
 Frame = +2

Query: 2   CGSLEDAREVFVHMRQKTVITWTTMISALAMHGDANNALKIFQQMKSENVEPNGVTFVGV 181
           CG +  AR VF  M  + V+TW TMI      G  + A K+F++MK  NV P+ +    +
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218

Query: 182 LYACSHAGLVEEGRKLFASMVDEYGITPKHEHYGCMVDLYGRANLLGEALQLIESM 349
           + AC   G +   R ++  ++ E  +         +V +Y  A  +  A +    M
Sbjct: 219 VSACGRTGNMRYNRAIYEFLI-ENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKM 273