BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00040436
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACB45089.1| putative polyprotein [Solanum habrochaites]             69   1e-12
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...    59   7e-10
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]    61   1e-09
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    52   2e-09
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    52   2e-09

>gb|ACB45089.1| putative polyprotein [Solanum habrochaites]
          Length = 849

 Score = 68.6 bits (166), Expect(2) = 1e-12
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = -3

Query: 170 AAPRARIAKQSRLSFPSSVTTSVNLFDLVHADLWGPYRFKTHVNCNMFLTLVEDKS 3
           + P   +AKQ+RL FP S T + N+FDL+HAD+WGPY+F TH     FLTLV+D S
Sbjct: 295 SCPICPLAKQTRLPFPQSPTRADNVFDLIHADVWGPYKFPTHDGNRYFLTLVDDCS 350



 Score = 29.3 bits (64), Expect(2) = 1e-12
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 321 SDDTFIAQVHSTDVWHARLGHAPANIVNMLPI 226
           S    ++ +   D+WH RLGH P  ++  + I
Sbjct: 253 SPSVALSTLDDVDLWHRRLGHIPHKVLQQMQI 284


>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 58.5 bits (140), Expect(2) = 7e-10
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = -3

Query: 149 AKQSRLSFPSSVTTSVNLFDLVHADLWGPYRFKTHVNCNMFLTLVEDKS 3
           AKQ+R SFP S+  ++ +F+L++ DLWGPYR  +H     FLT+++D S
Sbjct: 429 AKQTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYS 477



 Score = 29.6 bits (65), Expect(2) = 7e-10
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -2

Query: 285 DVWHARLGHAPANIVNMLP 229
           ++WH+R+GH  A +V+++P
Sbjct: 390 ELWHSRMGHPAARVVSLIP 408


>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
          Length = 1461

 Score = 60.8 bits (146), Expect(2) = 1e-09
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = -3

Query: 152 IAKQSRLSFPSSVTTSVNLFDLVHADLWGPYRFKTHVNCNMFLTLVED 9
           +AKQ+RLSFPSS  +S   FDL+H D+WGP+R  +H     FLT+V+D
Sbjct: 574 LAKQTRLSFPSSFISSHAPFDLIHCDIWGPHRINSHSGAXYFLTIVDD 621



 Score = 26.6 bits (57), Expect(2) = 1e-09
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 288 TDVWHARLGHAPANIVNMLPILVTRKPWTYVTSQYV 181
           +D+WH RLGH  +     L +L    P  Y  S++V
Sbjct: 536 SDLWHQRLGHPSS---GPLQVLAKVNPKIYFDSKHV 568


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 52.4 bits (124), Expect(2) = 2e-09
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = -3

Query: 149 AKQSRLSFPSSVTTSVNLFDLVHADLWGPYRFKTHVNCNMFLTLVEDKS 3
           AKQ+R +FP S   S++ F L+H D+WGPYR  ++     FLT+V+D S
Sbjct: 553 AKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYS 601



 Score = 34.3 bits (77), Expect(2) = 2e-09
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = -2

Query: 303 AQVHST-----DVWHARLGHAPANIVNMLP 229
           A VH++     D+WH RLGHA   IVN+LP
Sbjct: 503 AAVHTSVKAPFDLWHRRLGHASDKIVNLLP 532


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 52.4 bits (124), Expect(2) = 2e-09
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = -3

Query: 149 AKQSRLSFPSSVTTSVNLFDLVHADLWGPYRFKTHVNCNMFLTLVEDKS 3
           AKQ+R +FP S   S++ F L+H D+WGPYR  ++     FLT+V+D S
Sbjct: 329 AKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYS 377



 Score = 34.3 bits (77), Expect(2) = 2e-09
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = -2

Query: 303 AQVHST-----DVWHARLGHAPANIVNMLP 229
           A VH++     D+WH RLGHA   IVN+LP
Sbjct: 279 AAVHTSVKAPFDLWHRRLGHASDKIVNLLP 308