BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00040221
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             177   1e-42
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   177   1e-42
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   176   2e-42
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         174   5e-42
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   174   5e-42

>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  177 bits (448), Expect = 1e-42
 Identities = 81/127 (63%), Positives = 103/127 (81%)
 Frame = +1

Query: 1    RKSTSGYMFFMGETTFTWYSKKQPIVSLSTCEAEYVATSYCVCHAIWLRTLIHELRIPQP 180
            RKSTSG++F++G+T FTW SKKQPIV+LSTCEAEYVA + CVCHAIWLR L+ EL +PQ 
Sbjct: 1144 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1203

Query: 181  RSTEIRIDNKSAIELAKNPVHHERSKHIDVRFHFIREHVKEKDVHLRHVASRDQIADVLT 360
              T+I +DNKSAI LAKNPV H+RSKHID R+H+IRE V +KDV L +V + DQ+AD+ T
Sbjct: 1204 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFT 1263

Query: 361  *YVQKAD 381
              +++ D
Sbjct: 1264 KPLKRED 1270


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  177 bits (448), Expect = 1e-42
 Identities = 81/127 (63%), Positives = 103/127 (81%)
 Frame = +1

Query: 1    RKSTSGYMFFMGETTFTWYSKKQPIVSLSTCEAEYVATSYCVCHAIWLRTLIHELRIPQP 180
            RKSTSG++F++G+T FTW SKKQPIV+LSTCEAEYVA + CVCHAIWLR L+ EL +PQ 
Sbjct: 1173 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1232

Query: 181  RSTEIRIDNKSAIELAKNPVHHERSKHIDVRFHFIREHVKEKDVHLRHVASRDQIADVLT 360
              T+I +DNKSAI LAKNPV H+RSKHID R+H+IRE V +KDV L +V + DQ+AD+ T
Sbjct: 1233 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFT 1292

Query: 361  *YVQKAD 381
              +++ D
Sbjct: 1293 KPLKRED 1299


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  176 bits (445), Expect = 2e-42
 Identities = 81/127 (63%), Positives = 102/127 (80%)
 Frame = +1

Query: 1    RKSTSGYMFFMGETTFTWYSKKQPIVSLSTCEAEYVATSYCVCHAIWLRTLIHELRIPQP 180
            RKSTSG++F++G+T FTW SKKQPIV LSTCEAEYVA + CVCHAIWLR L+ EL +PQ 
Sbjct: 1205 RKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1264

Query: 181  RSTEIRIDNKSAIELAKNPVHHERSKHIDVRFHFIREHVKEKDVHLRHVASRDQIADVLT 360
              T+I +DNKSAI LAKNPV H+RSKHID R+H+IRE V +KDV L +V + DQ+AD+ T
Sbjct: 1265 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFT 1324

Query: 361  *YVQKAD 381
              +++ D
Sbjct: 1325 KPLKRED 1331


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  174 bits (442), Expect = 5e-42
 Identities = 80/120 (66%), Positives = 98/120 (81%)
 Frame = +1

Query: 1    RKSTSGYMFFMGETTFTWYSKKQPIVSLSTCEAEYVATSYCVCHAIWLRTLIHELRIPQP 180
            RKSTSG++F++G+T FTW SKKQPIV+LSTCEAEYVA + CVCHAIWLR L+ EL +PQ 
Sbjct: 1205 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1264

Query: 181  RSTEIRIDNKSAIELAKNPVHHERSKHIDVRFHFIREHVKEKDVHLRHVASRDQIADVLT 360
              T+I +DNKSAI LAKNPV H+RSKHID R+H+IRE V +KDV L +V + DQ+AD  T
Sbjct: 1265 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFT 1324


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  174 bits (442), Expect = 5e-42
 Identities = 80/120 (66%), Positives = 98/120 (81%)
 Frame = +1

Query: 1    RKSTSGYMFFMGETTFTWYSKKQPIVSLSTCEAEYVATSYCVCHAIWLRTLIHELRIPQP 180
            RKSTSG++F++G+T FTW SKKQPIV+LSTCEAEYVA + CVCHAIWLR L+ EL +PQ 
Sbjct: 1205 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1264

Query: 181  RSTEIRIDNKSAIELAKNPVHHERSKHIDVRFHFIREHVKEKDVHLRHVASRDQIADVLT 360
              T+I +DNKSAI LAKNPV H+RSKHID R+H+IRE V +KDV L +V + DQ+AD  T
Sbjct: 1265 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFT 1324