BLASTX nr result

ID: Cnidium21_contig00040003 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00040003
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum]   103   1e-20
gb|AAN28271.1| myb-like transcription factor 1 [Gossypium raimon...   103   1e-20
gb|AAN28273.1| myb-like transcription factor 1 [Gossypioides kir...   103   1e-20
gb|AAA33067.1| MYB1 [Gossypium hirsutum] gi|23476277|gb|AAN28269...   102   3e-20
gb|AAN28272.1| myb-like transcription factor 1 [Gossypium herbac...   102   3e-20

>gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum]
          Length = 294

 Score =  103 bits (258), Expect = 1e-20
 Identities = 65/125 (52%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
 Frame = +2

Query: 2   WSLIAARLPGRTDNEIKNYWNTHIKRKLISRGLDPQTHHRSFNSXXXXXXXXXXXXXXXS 181
           WSLIA RLPGRTDNEIKNYWNTHIKRKLISRG+DPQT HR  N                 
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQT-HRPLNQ----TANTNTVTAPTE 143

Query: 182 LDFRKNTSTVPSKISPSQXXXXXXXXXXXXXYKFKTESVEEGNCSSS---TTEETQQYYY 352
           LDFR NT T  SK S S              +K  T+S+EE NC++S   TT+E QQ   
Sbjct: 144 LDFR-NTPTSVSK-SSSIKNPSLDFNYNEFQFKSNTDSLEEPNCTTSSGMTTDEEQQEQL 201

Query: 353 HKQHE 367
           HKQ +
Sbjct: 202 HKQQQ 206


>gb|AAN28271.1| myb-like transcription factor 1 [Gossypium raimondii]
          Length = 268

 Score =  103 bits (258), Expect = 1e-20
 Identities = 62/127 (48%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
 Frame = +2

Query: 2   WSLIAARLPGRTDNEIKNYWNTHIKRKLISRGLDPQTHHRSFNSXXXXXXXXXXXXXXXS 181
           WSLIA RLPGRTDNEIKNYWNTHIKRKLISRG+DPQT HR  N                 
Sbjct: 75  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQT-HRPLNQ----TANTNTVTAPTE 129

Query: 182 LDFRKNTSTVPSKISPSQXXXXXXXXXXXXXYKFK--TESVEEGNCSSS---TTEETQQY 346
           LDFR     +P+ +S S              ++FK  T+S+EE NC++S   TT+E QQ 
Sbjct: 130 LDFR----NMPTSVSKSSSIKNPSLDFNYNEFQFKSNTDSLEEPNCTASSGMTTDEEQQE 185

Query: 347 YYHKQHE 367
             HKQ +
Sbjct: 186 QLHKQQQ 192


>gb|AAN28273.1| myb-like transcription factor 1 [Gossypioides kirkii]
          Length = 263

 Score =  103 bits (257), Expect = 1e-20
 Identities = 60/125 (48%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
 Frame = +2

Query: 2   WSLIAARLPGRTDNEIKNYWNTHIKRKLISRGLDPQTHHRSFNSXXXXXXXXXXXXXXXS 181
           WSLIA RLPGRTDNEIKNYWNTHIKRKLISRG+DPQT HR  N                 
Sbjct: 74  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQT-HRPLNQ----TANTNTVTAPTE 128

Query: 182 LDFRKNTSTVPSKISPSQXXXXXXXXXXXXXYKFKTESVEEGNCSSS---TTEETQQYYY 352
           LDFR      P+ +S S              +K  T+S+EE NC++S   TT+E QQ   
Sbjct: 129 LDFR----NTPTSVSKSSSIKNPNFNYNEFQFKSNTDSLEEPNCTASSGMTTDEEQQEQL 184

Query: 353 HKQHE 367
           HK+ +
Sbjct: 185 HKKQQ 189


>gb|AAA33067.1| MYB1 [Gossypium hirsutum] gi|23476277|gb|AAN28269.1| myb-like
           transcription factor 1 [Gossypium hirsutum]
          Length = 294

 Score =  102 bits (254), Expect = 3e-20
 Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
 Frame = +2

Query: 2   WSLIAARLPGRTDNEIKNYWNTHIKRKLISRGLDPQTHHRSFNSXXXXXXXXXXXXXXXS 181
           WSLIA RLPGRTDNEIKNYWNTHIKRKLISRG+DPQT HR  N                 
Sbjct: 89  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQT-HRPLNQ----TANTNTVTAPTE 143

Query: 182 LDFRKNTSTVPSKISPSQXXXXXXXXXXXXXYKFK--TESVEEGNCSSS---TTEETQQY 346
           LDFR +    P+ +S S              ++FK  T+S+EE NC++S   TT+E QQ 
Sbjct: 144 LDFRNS----PTSVSKSSSIKNPSLDFNYNEFQFKSNTDSLEEPNCTASSGMTTDEEQQE 199

Query: 347 YYHKQHE 367
             HK+ +
Sbjct: 200 QLHKKQQ 206


>gb|AAN28272.1| myb-like transcription factor 1 [Gossypium herbaceum]
          Length = 265

 Score =  102 bits (254), Expect = 3e-20
 Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
 Frame = +2

Query: 2   WSLIAARLPGRTDNEIKNYWNTHIKRKLISRGLDPQTHHRSFNSXXXXXXXXXXXXXXXS 181
           WSLIA RLPGRTDNEIKNYWNTHIKRKLISRG+DPQT HR  N                 
Sbjct: 72  WSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGIDPQT-HRPLNQ----TANTNTVTAPTE 126

Query: 182 LDFRKNTSTVPSKISPSQXXXXXXXXXXXXXYKFK--TESVEEGNCSSS---TTEETQQY 346
           LDFR +    P+ +S S              ++FK  T+S+EE NC++S   TT+E QQ 
Sbjct: 127 LDFRNS----PTSVSKSSSIKNPSLDFNYNEFQFKSNTDSLEEPNCTASSGMTTDEEQQE 182

Query: 347 YYHKQHE 367
             HK+ +
Sbjct: 183 QLHKKQQ 189


Top