BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039934
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                160   1e-37
gb|ABM55238.1| integrase [Beta vulgaris]                              159   3e-37
gb|ABH08430.1| putative integrase [Beta vulgaris]                     159   3e-37
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic...   157   8e-37
emb|CAN81294.1| hypothetical protein VITISV_003263 [Vitis vinifera]   157   1e-36

>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  160 bits (404), Expect = 1e-37
 Identities = 81/159 (50%), Positives = 105/159 (66%)
 Frame = +3

Query: 3    VCEACQXXXXXXXXXXXXTVPSTTKPLQLIHMDLFGPVNVMSLARKKYALVMVDDFTRYT 182
            VC ACQ             V +T +PL+L+HMDLFGPV  +S+   KY LV+VDDF+R+T
Sbjct: 901  VCGACQAGKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFT 960

Query: 183  WVDFLSSKDEAPQVIIEHIKRIDKESPNANVIALRSDNGTEFKNSVMDAFCKDKGISQQF 362
            WV FLS K E  +++ + ++R   E     +  +RSDNGTEFKN+ ++ F  ++GI  +F
Sbjct: 961  WVFFLSDKGETQEILKKFMRRAQNEF-ELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEF 1019

Query: 363  SAPRTPQQNGVAERKNRTLIEAARTMLLDAHLPTCFWAE 479
            S P TPQQNGV ERKNRTLIEAARTML +   P  FWAE
Sbjct: 1020 SVPYTPQQNGVVERKNRTLIEAARTMLDEYKTPDNFWAE 1058


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  159 bits (401), Expect = 3e-37
 Identities = 80/159 (50%), Positives = 104/159 (65%)
 Frame = +3

Query: 3    VCEACQXXXXXXXXXXXXTVPSTTKPLQLIHMDLFGPVNVMSLARKKYALVMVDDFTRYT 182
            VC+AC             T+ STTKPL+LIH+DL GP+ + S + K+Y LV+VDD++RYT
Sbjct: 723  VCDACARGKQVRSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYT 782

Query: 183  WVDFLSSKDEAPQVIIEHIKRIDKESPNANVIALRSDNGTEFKNSVMDAFCKDKGISQQF 362
            WV FLSSKDE     +   KR+   S +  ++ +RSD+G EF+N   D   +D G+   F
Sbjct: 783  WVIFLSSKDETYDEFLVFAKRVQNLSGH-KIMHIRSDHGKEFENYKFDDLSRDNGLDHNF 841

Query: 363  SAPRTPQQNGVAERKNRTLIEAARTMLLDAHLPTCFWAE 479
            SAPRTPQQNGV ERKNRTL E + TML+ + LP  FWAE
Sbjct: 842  SAPRTPQQNGVVERKNRTLEEMSGTMLIASELPRNFWAE 880


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  159 bits (401), Expect = 3e-37
 Identities = 80/159 (50%), Positives = 104/159 (65%)
 Frame = +3

Query: 3    VCEACQXXXXXXXXXXXXTVPSTTKPLQLIHMDLFGPVNVMSLARKKYALVMVDDFTRYT 182
            VC+AC             T+ STTKPL+LIH+DL GP+ + S + K+Y LV+VDD++RYT
Sbjct: 723  VCDACARGKQVRSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYT 782

Query: 183  WVDFLSSKDEAPQVIIEHIKRIDKESPNANVIALRSDNGTEFKNSVMDAFCKDKGISQQF 362
            WV FLSSKDE     +   KR+   S +  ++ +RSD+G EF+N   D   +D G+   F
Sbjct: 783  WVIFLSSKDETYDEFLVFAKRVQNLSGH-KIMHIRSDHGKEFENYKFDDLSRDNGLDHNF 841

Query: 363  SAPRTPQQNGVAERKNRTLIEAARTMLLDAHLPTCFWAE 479
            SAPRTPQQNGV ERKNRTL E + TML+ + LP  FWAE
Sbjct: 842  SAPRTPQQNGVVERKNRTLEEMSGTMLIASELPRNFWAE 880


>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  157 bits (397), Expect = 8e-37
 Identities = 78/158 (49%), Positives = 101/158 (63%)
 Frame = +3

Query: 6   CEACQXXXXXXXXXXXXTVPSTTKPLQLIHMDLFGPVNVMSLARKKYALVMVDDFTRYTW 185
           C ACQ             V +T++PL+L+HMDLFGPV  +S+   KY LV+VDDF+R+TW
Sbjct: 159 CAACQAGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTW 218

Query: 186 VDFLSSKDEAPQVIIEHIKRIDKESPNANVIALRSDNGTEFKNSVMDAFCKDKGISQQFS 365
           V FL  K E    +   ++R   E     V  +RSDNG+EFKN  ++ F +++GI  +FS
Sbjct: 219 VFFLQDKSETQGTLKRFLRRAQNEF-ELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFS 277

Query: 366 APRTPQQNGVAERKNRTLIEAARTMLLDAHLPTCFWAE 479
           AP TPQQNGV ERKNRTLI+ ARTML +   P CFW E
Sbjct: 278 APYTPQQNGVVERKNRTLIDMARTMLGEFKTPECFWTE 315


>emb|CAN81294.1| hypothetical protein VITISV_003263 [Vitis vinifera]
          Length = 748

 Score =  157 bits (396), Expect = 1e-36
 Identities = 80/159 (50%), Positives = 101/159 (63%)
 Frame = +3

Query: 3   VCEACQXXXXXXXXXXXXTVPSTTKPLQLIHMDLFGPVNVMSLARKKYALVMVDDFTRYT 182
           VCEACQ               STT+PL+L+HMDLFGP    SL  K YA V+VD+F+RYT
Sbjct: 443 VCEACQMGKQIKNSFKNKNFISTTRPLELLHMDLFGPSRTPSLGGKSYAFVIVDEFSRYT 502

Query: 183 WVDFLSSKDEAPQVIIEHIKRIDKESPNANVIALRSDNGTEFKNSVMDAFCKDKGISQQF 362
           WV FLS K+EA     +   ++  E     +  +RSD+G EF+N   + +C + GI+  F
Sbjct: 503 WVLFLSQKNEAFYEFSKFCNKVQNEK-GFTITCIRSDHGREFENIDFEDYCNEHGINHNF 561

Query: 363 SAPRTPQQNGVAERKNRTLIEAARTMLLDAHLPTCFWAE 479
           SAPRTPQQNGV ERKNRTL E A+TML + +LP  FWAE
Sbjct: 562 SAPRTPQQNGVVERKNRTLQEMAKTMLNENNLPKYFWAE 600