BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039888
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB83107.1| sigma factor 3 [Sinapis alba]                          91   1e-16
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....    89   5e-16
emb|CAD20832.1| sigma factor [Spinacia oleracea]                       87   2e-15
ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thal...    86   3e-15
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...    86   3e-15

>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
          Length = 567

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 41/62 (66%), Positives = 53/62 (85%)
 Frame = -3

Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8
           I+RNEAE++ GVK+VAD+E+I+T LE+ETGK AS+S WAEAA +N+K L  NLHFG YC+
Sbjct: 270 ISRNEAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCR 329

Query: 7   DE 2
           DE
Sbjct: 330 DE 331


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323785|gb|EFH54206.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 39/62 (62%), Positives = 54/62 (87%)
 Frame = -3

Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8
           I++NEAE++ GVK+VAD+E+I+T LE+E+GK ASLS WAEAA +N+K L +NLH+G YC+
Sbjct: 271 ISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCR 330

Query: 7   DE 2
           DE
Sbjct: 331 DE 332


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 39/62 (62%), Positives = 51/62 (82%)
 Frame = -3

Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8
           I +NEAE++ G+K+VA LEK+K  LEKETGKA SL+ WAEAA +++K LQ +LHFG YC+
Sbjct: 253 IAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCR 312

Query: 7   DE 2
           DE
Sbjct: 313 DE 314


>ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
           gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
           polymerase sigma factor sigC; Short=Sigma factor C;
           Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
           sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
           Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
           [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
           [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
           factor SigC [Arabidopsis thaliana]
           gi|7630012|emb|CAB88354.1| sigma factor SigC
           [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
           At3g53920 [Arabidopsis thaliana]
           gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
           C [Arabidopsis thaliana]
          Length = 571

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 38/62 (61%), Positives = 52/62 (83%)
 Frame = -3

Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8
           I+RNE E++ GVK+VAD+E+I+T LE+E+GK ASLS WA AA +N+K L +NLH+G YC+
Sbjct: 274 ISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333

Query: 7   DE 2
           DE
Sbjct: 334 DE 335


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 38/62 (61%), Positives = 52/62 (83%)
 Frame = -3

Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8
           I+RNE E++ GVK+VAD+E+I+T LE+E+GK ASLS WA AA +N+K L +NLH+G YC+
Sbjct: 274 ISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333

Query: 7   DE 2
           DE
Sbjct: 334 DE 335