BLASTX nr result
ID: Cnidium21_contig00039888
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00039888 (348 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAB83107.1| sigma factor 3 [Sinapis alba] 91 1e-16 ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 89 5e-16 emb|CAD20832.1| sigma factor [Spinacia oleracea] 87 2e-15 ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thal... 86 3e-15 dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 86 3e-15 >emb|CAB83107.1| sigma factor 3 [Sinapis alba] Length = 567 Score = 90.5 bits (223), Expect = 1e-16 Identities = 41/62 (66%), Positives = 53/62 (85%) Frame = -3 Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8 I+RNEAE++ GVK+VAD+E+I+T LE+ETGK AS+S WAEAA +N+K L NLHFG YC+ Sbjct: 270 ISRNEAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCR 329 Query: 7 DE 2 DE Sbjct: 330 DE 331 >ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 568 Score = 88.6 bits (218), Expect = 5e-16 Identities = 39/62 (62%), Positives = 54/62 (87%) Frame = -3 Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8 I++NEAE++ GVK+VAD+E+I+T LE+E+GK ASLS WAEAA +N+K L +NLH+G YC+ Sbjct: 271 ISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCR 330 Query: 7 DE 2 DE Sbjct: 331 DE 332 >emb|CAD20832.1| sigma factor [Spinacia oleracea] Length = 548 Score = 86.7 bits (213), Expect = 2e-15 Identities = 39/62 (62%), Positives = 51/62 (82%) Frame = -3 Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8 I +NEAE++ G+K+VA LEK+K LEKETGKA SL+ WAEAA +++K LQ +LHFG YC+ Sbjct: 253 IAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCR 312 Query: 7 DE 2 DE Sbjct: 313 DE 314 >ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana] gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor C; Short=Sigma-C; AltName: Full=RNA polymerase sigma factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags: Precursor gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana] gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana] gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana] Length = 571 Score = 85.9 bits (211), Expect = 3e-15 Identities = 38/62 (61%), Positives = 52/62 (83%) Frame = -3 Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8 I+RNE E++ GVK+VAD+E+I+T LE+E+GK ASLS WA AA +N+K L +NLH+G YC+ Sbjct: 274 ISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333 Query: 7 DE 2 DE Sbjct: 334 DE 335 >dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] Length = 571 Score = 85.9 bits (211), Expect = 3e-15 Identities = 38/62 (61%), Positives = 52/62 (83%) Frame = -3 Query: 187 ITRNEAELTVGVKLVADLEKIKTLLEKETGKAASLSSWAEAAQVNKKTLQQNLHFGCYCK 8 I+RNE E++ GVK+VAD+E+I+T LE+E+GK ASLS WA AA +N+K L +NLH+G YC+ Sbjct: 274 ISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCR 333 Query: 7 DE 2 DE Sbjct: 334 DE 335