BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039873
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   244   5e-63
emb|CBI31781.3| unnamed protein product [Vitis vinifera]              244   5e-63
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-...   238   5e-61
ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   235   3e-60
dbj|BAD94621.1| putative DNA mismatch repair protein [Arabidopsi...   235   3e-60

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  244 bits (623), Expect = 5e-63
 Identities = 120/144 (83%), Positives = 134/144 (93%)
 Frame = +3

Query: 3    SRNKGYVRPVFVDDNDPVQISIRSGRHPVLESIIQDSFVPNDTNLHSDSEYCQIITGPNM 182
            SRNK YVRPVFV D++PVQ+ I SGRHPVLE+++QD+FVPNDTNLH+D EYC+I+TGPNM
Sbjct: 768  SRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDNFVPNDTNLHADGEYCEIVTGPNM 827

Query: 183  GGKSCYIRQVALIAIMAQVGSFVPACSAKLHVLDGIYTRMGSFDSIQQGRSTFLEELSEA 362
            GGKSCYIRQVALIAIMAQVGSFVPA SAKL VLDGI+TRMGS DSIQQGRSTFLEELSEA
Sbjct: 828  GGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEA 887

Query: 363  SNILHNSSPRSLVIIDELGRGTST 434
            S+I+HN + RSLVIIDELGRGTST
Sbjct: 888  SHIIHNCTSRSLVIIDELGRGTST 911


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score =  244 bits (623), Expect = 5e-63
 Identities = 120/144 (83%), Positives = 134/144 (93%)
 Frame = +3

Query: 3    SRNKGYVRPVFVDDNDPVQISIRSGRHPVLESIIQDSFVPNDTNLHSDSEYCQIITGPNM 182
            SRNK YVRPVFV D++PVQ+ I SGRHPVLE+++QD+FVPNDTNLH+D EYC+I+TGPNM
Sbjct: 628  SRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDNFVPNDTNLHADGEYCEIVTGPNM 687

Query: 183  GGKSCYIRQVALIAIMAQVGSFVPACSAKLHVLDGIYTRMGSFDSIQQGRSTFLEELSEA 362
            GGKSCYIRQVALIAIMAQVGSFVPA SAKL VLDGI+TRMGS DSIQQGRSTFLEELSEA
Sbjct: 688  GGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEA 747

Query: 363  SNILHNSSPRSLVIIDELGRGTST 434
            S+I+HN + RSLVIIDELGRGTST
Sbjct: 748  SHIIHNCTSRSLVIIDELGRGTST 771


>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
          Length = 1070

 Score =  238 bits (606), Expect = 5e-61
 Identities = 117/144 (81%), Positives = 130/144 (90%)
 Frame = +3

Query: 3    SRNKGYVRPVFVDDNDPVQISIRSGRHPVLESIIQDSFVPNDTNLHSDSEYCQIITGPNM 182
            SRNKGYV PVFVDD++PVQI I SGRHPVLE+ +QD+FVPNDTN+H+D EYCQI+TGPNM
Sbjct: 735  SRNKGYVCPVFVDDHEPVQIQISSGRHPVLETTLQDNFVPNDTNMHADGEYCQIVTGPNM 794

Query: 183  GGKSCYIRQVALIAIMAQVGSFVPACSAKLHVLDGIYTRMGSFDSIQQGRSTFLEELSEA 362
            GGKSCYIRQVALI IMAQVGSFVPA SAKLHVLD IYTRMG+ DSIQ GRSTFLEELSE 
Sbjct: 795  GGKSCYIRQVALIVIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQLGRSTFLEELSET 854

Query: 363  SNILHNSSPRSLVIIDELGRGTST 434
            S+IL++ +  SLVIIDELGRGTST
Sbjct: 855  SHILNSCTEHSLVIIDELGRGTST 878


>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
            gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
            mismatch repair protein MSH3; Short=AtMSH3; AltName:
            Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
            Msh3 protein [Arabidopsis thaliana]
            gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
            Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  235 bits (599), Expect = 3e-60
 Identities = 115/144 (79%), Positives = 131/144 (90%)
 Frame = +3

Query: 3    SRNKGYVRPVFVDDNDPVQISIRSGRHPVLESIIQDSFVPNDTNLHSDSEYCQIITGPNM 182
            SRNK YVRP FVDD +PV+I+I+SGRHPVLE+I+QD+FVPNDT LH++ EYCQIITGPNM
Sbjct: 761  SRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNM 820

Query: 183  GGKSCYIRQVALIAIMAQVGSFVPACSAKLHVLDGIYTRMGSFDSIQQGRSTFLEELSEA 362
            GGKSCYIRQVALI+IMAQVGSFVPA  AKLHVLDG++TRMG+ DSIQ GRSTFLEELSEA
Sbjct: 821  GGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEA 880

Query: 363  SNILHNSSPRSLVIIDELGRGTST 434
            S+I+   S RSLVI+DELGRGTST
Sbjct: 881  SHIIRTCSSRSLVILDELGRGTST 904


>dbj|BAD94621.1| putative DNA mismatch repair protein [Arabidopsis thaliana]
          Length = 386

 Score =  235 bits (599), Expect = 3e-60
 Identities = 115/144 (79%), Positives = 131/144 (90%)
 Frame = +3

Query: 3   SRNKGYVRPVFVDDNDPVQISIRSGRHPVLESIIQDSFVPNDTNLHSDSEYCQIITGPNM 182
           SRNK YVRP FVDD +PV+I+I+SGRHPVLE+I+QD+FVPNDT LH++ EYCQIITGPNM
Sbjct: 66  SRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNM 125

Query: 183 GGKSCYIRQVALIAIMAQVGSFVPACSAKLHVLDGIYTRMGSFDSIQQGRSTFLEELSEA 362
           GGKSCYIRQVALI+IMAQVGSFVPA  AKLHVLDG++TRMG+ DSIQ GRSTFLEELSEA
Sbjct: 126 GGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEA 185

Query: 363 SNILHNSSPRSLVIIDELGRGTST 434
           S+I+   S RSLVI+DELGRGTST
Sbjct: 186 SHIIRTCSSRSLVILDELGRGTST 209