BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039848
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93119.1|TOP1_DAUCA RecName: Full=DNA topoisomerase 1; AltNam...   258   4e-67
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 246   2e-63
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                243   1e-62
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               243   1e-62
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       240   1e-61

>sp|P93119.1|TOP1_DAUCA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase I
            gi|1800221|gb|AAB41401.1| topoisomerase I [Daucus carota]
          Length = 790

 Score =  258 bits (659), Expect = 4e-67
 Identities = 140/178 (78%), Positives = 142/178 (79%), Gaps = 8/178 (4%)
 Frame = -1

Query: 512  DIKSTYHCCTLKVENVETKPPNILKFDFLGKDSIRYQNAVEVEPPVFSAIEQFRSGKEGG 333
            D   T  CCTLKVENVETK PNILKFDFLGKDSIRYQN VEVEP VFSAIEQFRSGKEGG
Sbjct: 498  DEADTVGCCTLKVENVETKRPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGG 557

Query: 332  DDLFDQLDTNKLNTHLKELMPGLTAKVFRTYNASITLDEM-----LSRETKGGDVAAKVV 168
            DDLFDQLDT+KLN HLKELMPGLTAKVFRTYNASITLDEM     LSRETKGGDVA KVV
Sbjct: 558  DDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVV 617

Query: 167  VYQHANKEVAIICNHQRTVSKS---QMLRXXXXXXXXXXXXXXXXXXLTRVNKGKPPL 3
            VYQHANKEVAIICNHQRTVSKS   QM+R                  LTRVNKGKPPL
Sbjct: 618  VYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL 675


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  246 bits (628), Expect = 2e-63
 Identities = 131/173 (75%), Positives = 135/173 (78%), Gaps = 3/173 (1%)
 Frame = -1

Query: 512  DIKSTYHCCTLKVENVETKPPNILKFDFLGKDSIRYQNAVEVEPPVFSAIEQFRSGKEGG 333
            D   T  CCTLKVENVE  PPNILKFDFLGKDSIRYQN VEVE  VF AI+QFRSGKEG 
Sbjct: 643  DEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS 702

Query: 332  DDLFDQLDTNKLNTHLKELMPGLTAKVFRTYNASITLDEMLSRETKGGDVAAKVVVYQHA 153
             DLFD LDT+KLN HLKELMPGLTAKVFRTYNASITLD+MLSRETKGGDVA KVVVYQHA
Sbjct: 703  SDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHA 762

Query: 152  NKEVAIICNHQRTVSKS---QMLRXXXXXXXXXXXXXXXXXXLTRVNKGKPPL 3
            NKEVAIICNHQRTVSKS   QMLR                  L+RV KGKPPL
Sbjct: 763  NKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPL 815


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  243 bits (621), Expect = 1e-62
 Identities = 127/172 (73%), Positives = 136/172 (79%), Gaps = 3/172 (1%)
 Frame = -1

Query: 512  DIKSTYHCCTLKVENVETKPPNILKFDFLGKDSIRYQNAVEVEPPVFSAIEQFRSGKEGG 333
            D   T  CCTLKVENVE  PPNILKFDFLGKDSIRYQN V+VEP VF AI+QFRSGKEG 
Sbjct: 662  DEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGS 721

Query: 332  DDLFDQLDTNKLNTHLKELMPGLTAKVFRTYNASITLDEMLSRETKGGDVAAKVVVYQHA 153
            +DLFD+LDT+KLN HLKELMPGLTAKVFRTYNASITLD+MLS+ETKGG+VA KVVVYQHA
Sbjct: 722  EDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAEKVVVYQHA 781

Query: 152  NKEVAIICNHQRTVSKS---QMLRXXXXXXXXXXXXXXXXXXLTRVNKGKPP 6
            NKEVAIICNHQRTVSKS   QM R                  L+RV KGKPP
Sbjct: 782  NKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTDLSRVKKGKPP 833


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  243 bits (620), Expect = 1e-62
 Identities = 127/173 (73%), Positives = 135/173 (78%), Gaps = 3/173 (1%)
 Frame = -1

Query: 512  DIKSTYHCCTLKVENVETKPPNILKFDFLGKDSIRYQNAVEVEPPVFSAIEQFRSGKEGG 333
            D   T  CCTLKVENVE KPP+ILKFDFLGKDSIRYQN VEVE PV+ AI+QFR+GK GG
Sbjct: 629  DEADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVEVELPVYKAIQQFRTGKRGG 688

Query: 332  DDLFDQLDTNKLNTHLKELMPGLTAKVFRTYNASITLDEMLSRETKGGDVAAKVVVYQHA 153
            DDLFD+LDT+KLN HLK LMPGLTAKVFRTYNASITLDEMLSRETKGG+VA K+VVYQHA
Sbjct: 689  DDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEMLSRETKGGNVAEKIVVYQHA 748

Query: 152  NKEVAIICNHQRTVSKS---QMLRXXXXXXXXXXXXXXXXXXLTRVNKGKPPL 3
            NKEVAIICNHQRTVSKS   QM R                  L R  KGKPPL
Sbjct: 749  NKEVAIICNHQRTVSKSHPAQMTRLNGKIDELKGILDGLQTDLARAKKGKPPL 801


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  240 bits (612), Expect = 1e-61
 Identities = 125/172 (72%), Positives = 134/172 (77%), Gaps = 3/172 (1%)
 Frame = -1

Query: 512  DIKSTYHCCTLKVENVETKPPNILKFDFLGKDSIRYQNAVEVEPPVFSAIEQFRSGKEGG 333
            D   T  CCTLKVENVE  PPNILKFDFLGKDSIRYQN V+VEP VF AI+QFRSGKEG 
Sbjct: 660  DEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGS 719

Query: 332  DDLFDQLDTNKLNTHLKELMPGLTAKVFRTYNASITLDEMLSRETKGGDVAAKVVVYQHA 153
            +DLFD+LDT+KLN HLKELMPGLTAKVFRTYNASITLD+MLS+ETKGG+VA  VVVYQHA
Sbjct: 720  EDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAENVVVYQHA 779

Query: 152  NKEVAIICNHQRTVSKS---QMLRXXXXXXXXXXXXXXXXXXLTRVNKGKPP 6
            NKEVAIICNHQRTVSKS   QM R                  L+R  KGKPP
Sbjct: 780  NKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPP 831