BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039785
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...    99   6e-19
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]    99   6e-19
ref|XP_002315729.1| predicted protein [Populus trichocarpa] gi|2...    77   3e-12
ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana] gi|...    73   5e-11
dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]            73   5e-11

>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Vitis vinifera]
           gi|297737163|emb|CBI26364.3| unnamed protein product
           [Vitis vinifera]
          Length = 902

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
 Frame = +3

Query: 108 MALVAPSFQLSPTTTIFIDSFQASLYKLHLCNPRRFLRYYSHVSFEKRCNFVVCGSINQE 287
           MAL+ PS Q  PTTT F+DSF ++  +L         R+ +H S+  R N +   S N +
Sbjct: 1   MALL-PSRQFYPTTTSFLDSFHST--RLQFFRYGSSNRFRTHSSYVAR-NTIASNSTNPQ 56

Query: 288 SKCNVLFRNKGANFGLNNARFCSRSSWLDNWNDTHKKNWPNSRQEVLNYRNXXXXXXXXX 467
            K N++F N   +   +     S  +W+D WN  H+K+ P   + V+NYRN         
Sbjct: 57  RKSNIVFTNTPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRN------SET 110

Query: 468 XXXXXXXXXXXXTMDKIVRRLKKFGYVDDVEEQIE-VGERVVEKGSIE 608
                       TM+KIV +LKKFGY+DDV+E  E V ER++EKGSIE
Sbjct: 111 VSRSDGGSGGGSTMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIE 158


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 1/168 (0%)
 Frame = +3

Query: 108 MALVAPSFQLSPTTTIFIDSFQASLYKLHLCNPRRFLRYYSHVSFEKRCNFVVCGSINQE 287
           MAL+ PS Q  PTTT F+DSF ++  +L         R+ +H S+  R N +   S N +
Sbjct: 1   MALL-PSRQFYPTTTSFLDSFHST--RLQFFRYGSSNRFRTHSSYVTR-NTIASNSTNPQ 56

Query: 288 SKCNVLFRNKGANFGLNNARFCSRSSWLDNWNDTHKKNWPNSRQEVLNYRNXXXXXXXXX 467
            K N++F N   +   +     S  +W+D WN  H+K+ P   + V+NYRN         
Sbjct: 57  RKSNIVFTNTPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKEXRPVMNYRN------SET 110

Query: 468 XXXXXXXXXXXXTMDKIVRRLKKFGYVDDVEEQIE-VGERVVEKGSIE 608
                       TM+KIV +LKKFGY+DDV+E  E V ER++EKGSIE
Sbjct: 111 VSRSDGGSGGGSTMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIE 158


>ref|XP_002315729.1| predicted protein [Populus trichocarpa] gi|222864769|gb|EEF01900.1|
           predicted protein [Populus trichocarpa]
          Length = 894

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 60/163 (36%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
 Frame = +3

Query: 135 LSPTTTIFIDSFQASLYKLHLCNPRRFLRYYSHVSFEKRCNFVVCGSI---NQESKCNVL 305
           L P+  ++IDSFQ+S  K H   P +F RY S  SF  R +     SI   N  +K    
Sbjct: 3   LVPSRQLYIDSFQSSFSKFH-GTPLQFFRYSS--SFPLRSHSGYACSITDKNPSTKSTSF 59

Query: 306 FRNKGANFGLNNARFCSRSSWLDNWNDTHKKNWPNSRQEVLNYRNXXXXXXXXXXXXXXX 485
             +K     L+       SSW  NWN  +K+N P + Q V +YR+               
Sbjct: 60  PTDKSKTLNLSTG-----SSWFFNWNKPNKQNLPRTPQAVFDYRS-----------NNSN 103

Query: 486 XXXXXXTMDKIVRRLKKFGYVD-DVEEQIE-VGERVVEKGSIE 608
                 TM+KIV +LKK GY+D DV E  E + ERV+EKGS+E
Sbjct: 104 SSGSGSTMEKIVEKLKKHGYMDGDVNENKERMQERVIEKGSVE 146


>ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
           gi|332643191|gb|AEE76712.1| CRM family member 3A
           [Arabidopsis thaliana]
          Length = 881

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
 Frame = +3

Query: 123 PSFQLSPTTTI--FIDSFQASLYKLHLCNPRRFLRYYSHVSFEKRCNFVVCGSINQESKC 296
           PS    PTT    F+ SFQ+S          RFLRY S +S    C  V   S N +   
Sbjct: 5   PSLHFCPTTVTKKFVYSFQSSFCF-------RFLRYSSSISLGS-CKGVTFSSRNDQI-- 54

Query: 297 NVLFRNKGANFGLNNARFCSRSSWLDNWNDTHKKNWPNSRQEVLNYRNXXXXXXXXXXXX 476
                   A+   + +R C+   WL+NWN   K+N P   + V+NYR             
Sbjct: 55  --------ASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEGRFSGSEIVSG 106

Query: 477 XXXXXXXXX--TMDKIVRRLKKFGYVDDVEEQIEVGERVVEKGSIE 608
                      TM+KIV +LKK+GY+++V+ +    ER +EKGS+E
Sbjct: 107 DDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKEIEQERRIEKGSVE 152


>dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
          Length = 717

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
 Frame = +3

Query: 123 PSFQLSPTTTI--FIDSFQASLYKLHLCNPRRFLRYYSHVSFEKRCNFVVCGSINQESKC 296
           PS    PTT    F+ SFQ+S          RFLRY S +S    C  V   S N +   
Sbjct: 5   PSLHFCPTTVTKKFVYSFQSSFCF-------RFLRYSSSISLGS-CKGVTFSSRNDQI-- 54

Query: 297 NVLFRNKGANFGLNNARFCSRSSWLDNWNDTHKKNWPNSRQEVLNYRNXXXXXXXXXXXX 476
                   A+   + +R C+   WL+NWN   K+N P   + V+NYR             
Sbjct: 55  --------ASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEGRFSGSEIVSG 106

Query: 477 XXXXXXXXX--TMDKIVRRLKKFGYVDDVEEQIEVGERVVEKGSIE 608
                      TM+KIV +LKK+GY+++V+ +    ER +EKGS+E
Sbjct: 107 DDNRSRDGDGSTMEKIVEKLKKYGYMEEVQNKEIEQERRIEKGSVE 152