BLASTX nr result
ID: Cnidium21_contig00039766
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00039766 (525 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent... 92 2e-25 ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor... 91 1e-24 gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helica... 94 2e-24 gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japo... 94 2e-24 ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] g... 94 2e-24 >ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] gi|3913425|sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gi|2275203|gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidopsis thaliana] gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9 [Arabidopsis thaliana] gi|28416499|gb|AAO42780.1| At2g47250/T8I13.9 [Arabidopsis thaliana] gi|330255726|gb|AEC10820.1| putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] Length = 729 Score = 92.0 bits (227), Expect(2) = 2e-25 Identities = 46/71 (64%), Positives = 52/71 (73%) Frame = +2 Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298 GP+KVV YSTLP +QQ +F+P P+P TE GPA RKIVVSTNI LTID IV VIDP Sbjct: 311 GPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 370 Query: 299 GFNKPNFYNPK 331 GF K YNP+ Sbjct: 371 GFAKQKVYNPR 381 Score = 48.5 bits (114), Expect(2) = 2e-25 Identities = 22/33 (66%), Positives = 28/33 (84%) Frame = +3 Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101 EPPGDIL+FLTG++EIED R+I KEV +LG + Sbjct: 277 EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQ 309 >ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus] gi|449515243|ref|XP_004164659.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Cucumis sativus] Length = 732 Score = 90.5 bits (223), Expect(2) = 1e-24 Identities = 46/71 (64%), Positives = 51/71 (71%) Frame = +2 Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298 GP+KVV YSTLP +QQ +FEP P P E GPA RKIVVSTNI LTID IV VIDP Sbjct: 314 GPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPAGRKIVVSTNIAETSLTIDGIVYVIDP 373 Query: 299 GFNKPNFYNPK 331 GF+K YNP+ Sbjct: 374 GFSKQKVYNPR 384 Score = 47.4 bits (111), Expect(2) = 1e-24 Identities = 21/33 (63%), Positives = 28/33 (84%) Frame = +3 Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101 EPPGDIL+FLTG++EIED R+I KE+ +LG + Sbjct: 280 EPPGDILVFLTGEEEIEDACRKINKEIGNLGDQ 312 >gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa Japonica Group] Length = 722 Score = 93.6 bits (231), Expect(2) = 2e-24 Identities = 47/71 (66%), Positives = 52/71 (73%) Frame = +2 Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298 GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365 Query: 299 GFNKPNFYNPK 331 GF+K YNP+ Sbjct: 366 GFSKQKVYNPR 376 Score = 43.5 bits (101), Expect(2) = 2e-24 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = +3 Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101 EP GDIL+FLTG++EIED R+I KE+ ++G + Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304 >gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japonica Group] Length = 707 Score = 93.6 bits (231), Expect(2) = 2e-24 Identities = 47/71 (66%), Positives = 52/71 (73%) Frame = +2 Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298 GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP Sbjct: 291 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 350 Query: 299 GFNKPNFYNPK 331 GF+K YNP+ Sbjct: 351 GFSKQKVYNPR 361 Score = 43.5 bits (101), Expect(2) = 2e-24 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = +3 Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101 EP GDIL+FLTG++EIED R+I KE+ ++G + Sbjct: 257 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 289 >ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] gi|108707809|gb|ABF95604.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa Japonica Group] gi|113548402|dbj|BAF11845.1| Os03g0314100 [Oryza sativa Japonica Group] gi|215694063|dbj|BAG89262.1| unnamed protein product [Oryza sativa Japonica Group] Length = 564 Score = 93.6 bits (231), Expect(2) = 2e-24 Identities = 47/71 (66%), Positives = 52/71 (73%) Frame = +2 Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298 GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365 Query: 299 GFNKPNFYNPK 331 GF+K YNP+ Sbjct: 366 GFSKQKVYNPR 376 Score = 43.5 bits (101), Expect(2) = 2e-24 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = +3 Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101 EP GDIL+FLTG++EIED R+I KE+ ++G + Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304