BLASTX nr result

ID: Cnidium21_contig00039766 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039766
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent...    92   2e-25
ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor...    91   1e-24
gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helica...    94   2e-24
gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japo...    94   2e-24
ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] g...    94   2e-24

>ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent RNA helicase
           [Arabidopsis thaliana]
           gi|3913425|sp|O22899.1|DHX15_ARATH RecName:
           Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase gi|2275203|gb|AAB63825.1| putative pre-mRNA
           splicing factor RNA helicase [Arabidopsis thaliana]
           gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9
           [Arabidopsis thaliana] gi|28416499|gb|AAO42780.1|
           At2g47250/T8I13.9 [Arabidopsis thaliana]
           gi|330255726|gb|AEC10820.1| putative pre-mRNA-splicing
           factor ATP-dependent RNA helicase [Arabidopsis thaliana]
          Length = 729

 Score = 92.0 bits (227), Expect(2) = 2e-25
 Identities = 46/71 (64%), Positives = 52/71 (73%)
 Frame = +2

Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
           GP+KVV  YSTLP  +QQ +F+P P+P TE GPA RKIVVSTNI    LTID IV VIDP
Sbjct: 311 GPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 370

Query: 299 GFNKPNFYNPK 331
           GF K   YNP+
Sbjct: 371 GFAKQKVYNPR 381



 Score = 48.5 bits (114), Expect(2) = 2e-25
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +3

Query: 3   EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
           EPPGDIL+FLTG++EIED  R+I KEV +LG +
Sbjct: 277 EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQ 309


>ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like [Cucumis sativus]
           gi|449515243|ref|XP_004164659.1| PREDICTED: probable
           pre-mRNA-splicing factor ATP-dependent RNA helicase-like
           [Cucumis sativus]
          Length = 732

 Score = 90.5 bits (223), Expect(2) = 1e-24
 Identities = 46/71 (64%), Positives = 51/71 (71%)
 Frame = +2

Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
           GP+KVV  YSTLP  +QQ +FEP P P  E GPA RKIVVSTNI    LTID IV VIDP
Sbjct: 314 GPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPAGRKIVVSTNIAETSLTIDGIVYVIDP 373

Query: 299 GFNKPNFYNPK 331
           GF+K   YNP+
Sbjct: 374 GFSKQKVYNPR 384



 Score = 47.4 bits (111), Expect(2) = 1e-24
 Identities = 21/33 (63%), Positives = 28/33 (84%)
 Frame = +3

Query: 3   EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
           EPPGDIL+FLTG++EIED  R+I KE+ +LG +
Sbjct: 280 EPPGDILVFLTGEEEIEDACRKINKEIGNLGDQ 312


>gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative,
           expressed [Oryza sativa Japonica Group]
          Length = 722

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 47/71 (66%), Positives = 52/71 (73%)
 Frame = +2

Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
           GP+KVV  YSTLP  +QQ +FEP P PS E GPA RKIVVSTNI    LTID IV VIDP
Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365

Query: 299 GFNKPNFYNPK 331
           GF+K   YNP+
Sbjct: 366 GFSKQKVYNPR 376



 Score = 43.5 bits (101), Expect(2) = 2e-24
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
           EP GDIL+FLTG++EIED  R+I KE+ ++G +
Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304


>gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japonica Group]
          Length = 707

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 47/71 (66%), Positives = 52/71 (73%)
 Frame = +2

Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
           GP+KVV  YSTLP  +QQ +FEP P PS E GPA RKIVVSTNI    LTID IV VIDP
Sbjct: 291 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 350

Query: 299 GFNKPNFYNPK 331
           GF+K   YNP+
Sbjct: 351 GFSKQKVYNPR 361



 Score = 43.5 bits (101), Expect(2) = 2e-24
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
           EP GDIL+FLTG++EIED  R+I KE+ ++G +
Sbjct: 257 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 289


>ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group]
           gi|108707809|gb|ABF95604.1| Pre-mRNA splicing factor
           ATP-dependent RNA helicase, putative, expressed [Oryza
           sativa Japonica Group] gi|113548402|dbj|BAF11845.1|
           Os03g0314100 [Oryza sativa Japonica Group]
           gi|215694063|dbj|BAG89262.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 564

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 47/71 (66%), Positives = 52/71 (73%)
 Frame = +2

Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
           GP+KVV  YSTLP  +QQ +FEP P PS E GPA RKIVVSTNI    LTID IV VIDP
Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365

Query: 299 GFNKPNFYNPK 331
           GF+K   YNP+
Sbjct: 366 GFSKQKVYNPR 376



 Score = 43.5 bits (101), Expect(2) = 2e-24
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
           EP GDIL+FLTG++EIED  R+I KE+ ++G +
Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304


Top