BLASTX nr result
ID: Cnidium21_contig00039766
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00039766
(525 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent... 92 2e-25
ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor... 91 1e-24
gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helica... 94 2e-24
gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japo... 94 2e-24
ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group] g... 94 2e-24
>ref|NP_182247.1| putative pre-mRNA-splicing factor ATP-dependent RNA helicase
[Arabidopsis thaliana]
gi|3913425|sp|O22899.1|DHX15_ARATH RecName:
Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
helicase gi|2275203|gb|AAB63825.1| putative pre-mRNA
splicing factor RNA helicase [Arabidopsis thaliana]
gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9
[Arabidopsis thaliana] gi|28416499|gb|AAO42780.1|
At2g47250/T8I13.9 [Arabidopsis thaliana]
gi|330255726|gb|AEC10820.1| putative pre-mRNA-splicing
factor ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 729
Score = 92.0 bits (227), Expect(2) = 2e-25
Identities = 46/71 (64%), Positives = 52/71 (73%)
Frame = +2
Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
GP+KVV YSTLP +QQ +F+P P+P TE GPA RKIVVSTNI LTID IV VIDP
Sbjct: 311 GPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 370
Query: 299 GFNKPNFYNPK 331
GF K YNP+
Sbjct: 371 GFAKQKVYNPR 381
Score = 48.5 bits (114), Expect(2) = 2e-25
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +3
Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
EPPGDIL+FLTG++EIED R+I KEV +LG +
Sbjct: 277 EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQ 309
>ref|XP_004135980.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Cucumis sativus]
gi|449515243|ref|XP_004164659.1| PREDICTED: probable
pre-mRNA-splicing factor ATP-dependent RNA helicase-like
[Cucumis sativus]
Length = 732
Score = 90.5 bits (223), Expect(2) = 1e-24
Identities = 46/71 (64%), Positives = 51/71 (71%)
Frame = +2
Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
GP+KVV YSTLP +QQ +FEP P P E GPA RKIVVSTNI LTID IV VIDP
Sbjct: 314 GPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPAGRKIVVSTNIAETSLTIDGIVYVIDP 373
Query: 299 GFNKPNFYNPK 331
GF+K YNP+
Sbjct: 374 GFSKQKVYNPR 384
Score = 47.4 bits (111), Expect(2) = 1e-24
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +3
Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
EPPGDIL+FLTG++EIED R+I KE+ +LG +
Sbjct: 280 EPPGDILVFLTGEEEIEDACRKINKEIGNLGDQ 312
>gb|ABF95605.1| Pre-mRNA splicing factor ATP-dependent RNA helicase, putative,
expressed [Oryza sativa Japonica Group]
Length = 722
Score = 93.6 bits (231), Expect(2) = 2e-24
Identities = 47/71 (66%), Positives = 52/71 (73%)
Frame = +2
Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP
Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365
Query: 299 GFNKPNFYNPK 331
GF+K YNP+
Sbjct: 366 GFSKQKVYNPR 376
Score = 43.5 bits (101), Expect(2) = 2e-24
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
EP GDIL+FLTG++EIED R+I KE+ ++G +
Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304
>gb|EEE58940.1| hypothetical protein OsJ_10612 [Oryza sativa Japonica Group]
Length = 707
Score = 93.6 bits (231), Expect(2) = 2e-24
Identities = 47/71 (66%), Positives = 52/71 (73%)
Frame = +2
Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP
Sbjct: 291 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 350
Query: 299 GFNKPNFYNPK 331
GF+K YNP+
Sbjct: 351 GFSKQKVYNPR 361
Score = 43.5 bits (101), Expect(2) = 2e-24
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
EP GDIL+FLTG++EIED R+I KE+ ++G +
Sbjct: 257 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 289
>ref|NP_001049931.1| Os03g0314100 [Oryza sativa Japonica Group]
gi|108707809|gb|ABF95604.1| Pre-mRNA splicing factor
ATP-dependent RNA helicase, putative, expressed [Oryza
sativa Japonica Group] gi|113548402|dbj|BAF11845.1|
Os03g0314100 [Oryza sativa Japonica Group]
gi|215694063|dbj|BAG89262.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 564
Score = 93.6 bits (231), Expect(2) = 2e-24
Identities = 47/71 (66%), Positives = 52/71 (73%)
Frame = +2
Query: 119 GPLKVVSPYSTLPSLVQQMVFEPTPLPSTEVGPARRKIVVSTNIVVNVLTIDWIVNVIDP 298
GP+KVV YSTLP +QQ +FEP P PS E GPA RKIVVSTNI LTID IV VIDP
Sbjct: 306 GPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIVYVIDP 365
Query: 299 GFNKPNFYNPK 331
GF+K YNP+
Sbjct: 366 GFSKQKVYNPR 376
Score = 43.5 bits (101), Expect(2) = 2e-24
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 3 EPPGDILLFLTGKKEIEDVRRRIAKEVCDLGSR 101
EP GDIL+FLTG++EIED R+I KE+ ++G +
Sbjct: 272 EPAGDILVFLTGEEEIEDACRKINKEINNMGDQ 304