BLASTX nr result
ID: Cnidium21_contig00039750
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00039750 (293 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_191790.1| pre-mRNA-splicing factor ATP-dependent RNA heli... 117 1e-24 ref|XP_003591371.1| ATP-dependent RNA helicase-like protein [Med... 116 2e-24 ref|XP_003518717.1| PREDICTED: probable pre-mRNA-splicing factor... 116 2e-24 ref|XP_002878448.1| hypothetical protein ARALYDRAFT_349295 [Arab... 114 6e-24 gb|ACN28016.1| unknown [Zea mays] gi|414866511|tpg|DAA45068.1| T... 114 8e-24 >ref|NP_191790.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] gi|7340702|emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|21539575|gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|34098783|gb|AAQ56774.1| At3g62310 [Arabidopsis thaliana] gi|332646816|gb|AEE80337.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] Length = 726 Score = 117 bits (292), Expect = 1e-24 Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 11/87 (12%) Frame = -2 Query: 229 MGTERKRKVSLFDVVDDSAIP-----------NNVLSSINRWNGRPYTQRYYDILDKRKT 83 MGTERKRK+SLFDV+DD + P + S IN+WNG+PY+QRYYDIL+KR+T Sbjct: 1 MGTERKRKISLFDVMDDPSAPAKNAKTSGLPDGGINSLINKWNGKPYSQRYYDILEKRRT 60 Query: 82 LPVWLQKDEFFKQLKDNQTLILVGETG 2 LPVWLQK+EF K L +NQTLILVGETG Sbjct: 61 LPVWLQKEEFLKTLNNNQTLILVGETG 87 >ref|XP_003591371.1| ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|355480419|gb|AES61622.1| ATP-dependent RNA helicase-like protein [Medicago truncatula] Length = 721 Score = 116 bits (291), Expect = 2e-24 Identities = 60/86 (69%), Positives = 69/86 (80%), Gaps = 10/86 (11%) Frame = -2 Query: 229 MGTERKRKVSLFDVVDDSA----------IPNNVLSSINRWNGRPYTQRYYDILDKRKTL 80 MGTERKRKVSLFDVVDD+A I NN+ INRWNG+PY+QRY++IL+KRKTL Sbjct: 1 MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNNL---INRWNGKPYSQRYHEILEKRKTL 57 Query: 79 PVWLQKDEFFKQLKDNQTLILVGETG 2 PVW QK++F K LKDNQTLILVGETG Sbjct: 58 PVWHQKEDFLKVLKDNQTLILVGETG 83 >ref|XP_003518717.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max] Length = 722 Score = 116 bits (290), Expect = 2e-24 Identities = 58/84 (69%), Positives = 67/84 (79%), Gaps = 8/84 (9%) Frame = -2 Query: 229 MGTERKRKVSLFDVVDDSAIPNNVLSS--------INRWNGRPYTQRYYDILDKRKTLPV 74 MGTERKRKVSLFDVVDD+A + + INRWNG+PY+QRY+DIL+KRKTLPV Sbjct: 1 MGTERKRKVSLFDVVDDAAAKMSKSNGGAVAANNLINRWNGKPYSQRYHDILEKRKTLPV 60 Query: 73 WLQKDEFFKQLKDNQTLILVGETG 2 W QK+EF + LKDNQTLILVGETG Sbjct: 61 WHQKEEFLQALKDNQTLILVGETG 84 >ref|XP_002878448.1| hypothetical protein ARALYDRAFT_349295 [Arabidopsis lyrata subsp. lyrata] gi|297324286|gb|EFH54707.1| hypothetical protein ARALYDRAFT_349295 [Arabidopsis lyrata subsp. lyrata] Length = 686 Score = 114 bits (286), Expect = 6e-24 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 11/87 (12%) Frame = -2 Query: 229 MGTERKRKVSLFDVVDD-SAIPNN----------VLSSINRWNGRPYTQRYYDILDKRKT 83 MGTERKRK+SLFDV+DD SA N + S IN+WNG+PY+QRYYDIL+KR+T Sbjct: 1 MGTERKRKISLFDVMDDPSAAAKNTKISGLADGGINSLINKWNGKPYSQRYYDILEKRRT 60 Query: 82 LPVWLQKDEFFKQLKDNQTLILVGETG 2 LPVWLQK+EF K L NQTLILVGETG Sbjct: 61 LPVWLQKEEFLKTLNSNQTLILVGETG 87 >gb|ACN28016.1| unknown [Zea mays] gi|414866511|tpg|DAA45068.1| TPA: putative RNA helicase family protein [Zea mays] Length = 721 Score = 114 bits (285), Expect = 8e-24 Identities = 55/90 (61%), Positives = 68/90 (75%), Gaps = 14/90 (15%) Frame = -2 Query: 229 MGTERKRKVSLFDVVDDSAIPNNVLS--------------SINRWNGRPYTQRYYDILDK 92 MGTERKRKVSLFDVVD++++ + + S+NRWNGRPYT RY+DIL+K Sbjct: 1 MGTERKRKVSLFDVVDETSVSAKLRAASNGAAATATGGNPSVNRWNGRPYTARYFDILEK 60 Query: 91 RKTLPVWLQKDEFFKQLKDNQTLILVGETG 2 R+TLPVW QK+EF + L+DNQTLILVGETG Sbjct: 61 RRTLPVWQQKEEFLRSLRDNQTLILVGETG 90