BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039362
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              271   5e-71
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   271   5e-71
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   269   2e-70
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   268   3e-70
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   266   2e-69

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  271 bits (692), Expect = 5e-71
 Identities = 133/159 (83%), Positives = 141/159 (88%), Gaps = 1/159 (0%)
 Frame = -3

Query: 474 RDVDGRFGIKKEGN-SSTKVWLEKMRTLFIRKVSGFSSRSIITGDPFKGVGEIGLPFEIA 298
           R +D RFG  KE N SSTK WLEKMRTLFIRK SGFSSRS+ITGD +K V EIGLPFEIA
Sbjct: 347 RSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIA 406

Query: 297 QRITFEEKVNQHNMIYLQKLVDQKLCLAYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 118
           QRITFEE+VN HNM +LQ LVD+KLCL Y+DG STYSLREGSKGHTFLRPGQVVHRRIMD
Sbjct: 407 QRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMD 466

Query: 117 GDIVFINRPPTTHKHSLQALKVYIHDDHTVKINPLICAP 1
           GDIVFINRPPTTHKHSLQAL VY+HDDHTVKINPLIC P
Sbjct: 467 GDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 505


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  271 bits (692), Expect = 5e-71
 Identities = 133/159 (83%), Positives = 141/159 (88%), Gaps = 1/159 (0%)
 Frame = -3

Query: 474 RDVDGRFGIKKEGN-SSTKVWLEKMRTLFIRKVSGFSSRSIITGDPFKGVGEIGLPFEIA 298
           R +D RFG  KE N SSTK WLEKMRTLFIRK SGFSSRS+ITGD +K V EIGLPFEIA
Sbjct: 287 RSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIA 346

Query: 297 QRITFEEKVNQHNMIYLQKLVDQKLCLAYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 118
           QRITFEE+VN HNM +LQ LVD+KLCL Y+DG STYSLREGSKGHTFLRPGQVVHRRIMD
Sbjct: 347 QRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMD 406

Query: 117 GDIVFINRPPTTHKHSLQALKVYIHDDHTVKINPLICAP 1
           GDIVFINRPPTTHKHSLQAL VY+HDDHTVKINPLIC P
Sbjct: 407 GDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 445


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  269 bits (688), Expect = 2e-70
 Identities = 129/159 (81%), Positives = 143/159 (89%), Gaps = 1/159 (0%)
 Frame = -3

Query: 474 RDVDGRFGIKKEGN-SSTKVWLEKMRTLFIRKVSGFSSRSIITGDPFKGVGEIGLPFEIA 298
           RDVD R+G+KKE + S+TK WLEKMRTLFIRK SGFSSRS+ITGD +  V ++G+P+EIA
Sbjct: 289 RDVDTRYGVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIA 348

Query: 297 QRITFEEKVNQHNMIYLQKLVDQKLCLAYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 118
           QRITFEE+V+ HNM YLQ+LVD KLCL YKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD
Sbjct: 349 QRITFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 408

Query: 117 GDIVFINRPPTTHKHSLQALKVYIHDDHTVKINPLICAP 1
           GDIVFINRPPTTHKHSLQAL VY+HDDH VKINPLIC P
Sbjct: 409 GDIVFINRPPTTHKHSLQALSVYVHDDHAVKINPLICGP 447


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  268 bits (686), Expect = 3e-70
 Identities = 127/159 (79%), Positives = 144/159 (90%), Gaps = 1/159 (0%)
 Frame = -3

Query: 474 RDVDGRFGIKKEGN-SSTKVWLEKMRTLFIRKVSGFSSRSIITGDPFKGVGEIGLPFEIA 298
           RDVD R+G+KK+ + SSTK WLEKMRTLFIRK SGFSSRS+ITGD +  V ++G+P+EIA
Sbjct: 207 RDVDVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGIPYEIA 266

Query: 297 QRITFEEKVNQHNMIYLQKLVDQKLCLAYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 118
           QRITFEE+V+ HNM YLQ+LVD KLCL Y+DGSSTYSLREGSKGHTFLRPGQVVHRRI+D
Sbjct: 267 QRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIID 326

Query: 117 GDIVFINRPPTTHKHSLQALKVYIHDDHTVKINPLICAP 1
           GD+VFINRPPTTHKHSLQAL VY+HDDHTVKINPLIC P
Sbjct: 327 GDVVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGP 365


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  266 bits (679), Expect = 2e-69
 Identities = 130/159 (81%), Positives = 140/159 (88%), Gaps = 1/159 (0%)
 Frame = -3

Query: 474 RDVDGRFGIKKEGN-SSTKVWLEKMRTLFIRKVSGFSSRSIITGDPFKGVGEIGLPFEIA 298
           RDV  RFG+ KE N SSTK WLEKMRTLFIRK SGFSSRS+ITGD +K V EIG+P EIA
Sbjct: 289 RDVGERFGVHKESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIA 348

Query: 297 QRITFEEKVNQHNMIYLQKLVDQKLCLAYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMD 118
           QRITFEE+VN HNM YLQ+LVD KLCL Y+DGSSTYSLREGSKGHTFLR GQ+VHRRIMD
Sbjct: 349 QRITFEERVNAHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMD 408

Query: 117 GDIVFINRPPTTHKHSLQALKVYIHDDHTVKINPLICAP 1
           GD+VFINRPPTTHKHSLQAL VY+HD HTVKINPLIC P
Sbjct: 409 GDMVFINRPPTTHKHSLQALSVYVHDGHTVKINPLICGP 447