BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039306
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001468300.1| RNA polymerase beta subunit [Ipomoea purpure...    51   4e-08
ref|YP_004222638.1| RNA polymerase beta subunit [Anthriscus cere...    48   2e-07
gb|ABU85190.1| RNA polymerase beta subunit [Anethum graveolens]        48   2e-07
ref|YP_740109.1| RNA polymerase beta subunit [Daucus carota] gi|...    48   2e-07
ref|YP_005089488.1| rpoB gene product (chloroplast) [Silene coni...    48   2e-07

>ref|YP_001468300.1| RNA polymerase beta subunit [Ipomoea purpurea]
           gi|182676565|sp|A7Y3B9.1|RPOB_IPOPU RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|157056750|gb|ABV02340.1| RNA polymerase beta subunit
           [Ipomoea purpurea]
          Length = 1067

 Score = 51.2 bits (121), Expect(2) = 4e-08
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = -3

Query: 301 REKNWVKFY*QPACVVGDTVFSGSLWKEL*KKLFQQKCE 185
           +E   ++FY Q ACV GD +FS SLWKEL KK FQQ+CE
Sbjct: 216 KENAILEFYQQFACVDGDPIFSESLWKELQKKFFQQRCE 254



 Score = 30.8 bits (68), Expect(2) = 4e-08
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -2

Query: 365 NLKEISKNVCYH*YFLSLLTD*GKK 291
           NL+EI +NVCY   FLS L+D  KK
Sbjct: 187 NLREILENVCYPEIFLSFLSDKEKK 211


>ref|YP_004222638.1| RNA polymerase beta subunit [Anthriscus cerefolium]
           gi|289645567|gb|ADD13630.1| RNA polymerase beta subunit
           [Anthriscus cerefolium]
          Length = 1070

 Score = 47.8 bits (112), Expect(2) = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -3

Query: 301 REKNWVKFY*QPACVVGDTVFSGSLWKEL*KKLFQQKCE 185
           +E   ++FY Q ACV GD VFS SL KEL KK FQQKCE
Sbjct: 219 KENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQKCE 257



 Score = 32.3 bits (72), Expect(2) = 2e-07
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -2

Query: 365 NLKEISKNVCYH*YFLSLLTD*GKK 291
           NL+EI +NVCY   FLS LTD  KK
Sbjct: 190 NLREILENVCYPEIFLSFLTDKEKK 214


>gb|ABU85190.1| RNA polymerase beta subunit [Anethum graveolens]
          Length = 1070

 Score = 47.8 bits (112), Expect(2) = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -3

Query: 301 REKNWVKFY*QPACVVGDTVFSGSLWKEL*KKLFQQKCE 185
           +E   ++FY Q ACV GD VFS SL KEL KK FQQKCE
Sbjct: 219 KENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQKCE 257



 Score = 32.3 bits (72), Expect(2) = 2e-07
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -2

Query: 365 NLKEISKNVCYH*YFLSLLTD*GKK 291
           NL+EI +NVCY   FLS LTD  KK
Sbjct: 190 NLREILENVCYPEIFLSFLTDKEKK 214


>ref|YP_740109.1| RNA polymerase beta subunit [Daucus carota]
           gi|122233840|sp|Q0G9X0.1|RPOB_DAUCA RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|113200900|gb|ABI32416.1| RNA polymerase beta subunit
           [Daucus carota]
          Length = 1070

 Score = 47.8 bits (112), Expect(2) = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -3

Query: 301 REKNWVKFY*QPACVVGDTVFSGSLWKEL*KKLFQQKCE 185
           +E   ++FY Q ACV GD VFS SL KEL KK FQQKCE
Sbjct: 219 KENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQKCE 257



 Score = 32.3 bits (72), Expect(2) = 2e-07
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -2

Query: 365 NLKEISKNVCYH*YFLSLLTD*GKK 291
           NL+EI +NVCY   FLS LTD  KK
Sbjct: 190 NLREILENVCYPEIFLSFLTDKEKK 214


>ref|YP_005089488.1| rpoB gene product (chloroplast) [Silene conica]
           gi|329755431|gb|AEC03995.1| RNA polymerase beta subunit
           (chloroplast) [Silene conica]
          Length = 1070

 Score = 47.8 bits (112), Expect(2) = 2e-07
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -3

Query: 301 REKNWVKFY*QPACVVGDTVFSGSLWKEL*KKLFQQKCE 185
           +E   ++FY Q ACV GD VFS SL KEL KK FQQKCE
Sbjct: 219 KENAILEFYQQFACVGGDPVFSESLCKELQKKFFQQKCE 257



 Score = 32.0 bits (71), Expect(2) = 2e-07
 Identities = 16/26 (61%), Positives = 17/26 (65%)
 Frame = -2

Query: 365 NLKEISKNVCYH*YFLSLLTD*GKKL 288
           NLKEI  NVCY   FLS L D  KK+
Sbjct: 190 NLKEILDNVCYPEIFLSFLNDKDKKI 215