BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039303
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD44440.1| DNA-directed RNA polymerase II second largest ch...   105   3e-21
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   103   1e-20
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab...   103   1e-20
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid...   103   1e-20
emb|CAA79528.1| RNA polymerase II second largest subunit [Arabid...   103   1e-20

>dbj|BAD44440.1| DNA-directed RNA polymerase II second largest chain [Arabidopsis
           thaliana]
          Length = 124

 Score =  105 bits (263), Expect = 3e-21
 Identities = 46/70 (65%), Positives = 61/70 (87%)
 Frame = -3

Query: 259 DDEEITQDDAWTVIGAYFKDNGLVRQQIESFDDFIGNTIQDIVNDTGEIEVRSRAQHNPG 80
           DDEEITQ+DAW VI AYF++ GLVRQQ++SFD+FI NT+Q+IV+++ +IE+R  +QHNPG
Sbjct: 17  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76

Query: 79  HRLDFAEVYS 50
           H+ DFAEV S
Sbjct: 77  HQSDFAEVVS 86


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
           gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
           Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2; AltName: Full=DNA-directed RNA polymerase
           II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
           polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  103 bits (258), Expect = 1e-20
 Identities = 48/80 (60%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
 Frame = -3

Query: 271 EYNCDD--EEITQDDAWTVIGAYFKDNGLVRQQIESFDDFIGNTIQDIVNDTGEIEVRSR 98
           +YN DD  EEITQ+DAW VI AYF++ GLVRQQ++SFD+FI NT+Q+IV+++ +IE+R  
Sbjct: 10  QYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 69

Query: 97  AQHNPGHRLDFAE-VYSRGF 41
           +QHNPGH+ DFAE +Y   F
Sbjct: 70  SQHNPGHQSDFAETIYKINF 89


>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
           ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score =  103 bits (257), Expect = 1e-20
 Identities = 46/74 (62%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
 Frame = -3

Query: 259 DDEEITQDDAWTVIGAYFKDNGLVRQQIESFDDFIGNTIQDIVNDTGEIEVRSRAQHNPG 80
           DDEEITQ+DAW VI AYF++ GLVRQQ++SFD+FI NT+Q+IV+++ +IE+R  +QHNPG
Sbjct: 17  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76

Query: 79  HRLDFAE-VYSRGF 41
           H+ DFAE +Y   F
Sbjct: 77  HQSDFAETIYKISF 90


>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  103 bits (257), Expect = 1e-20
 Identities = 46/74 (62%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
 Frame = -3

Query: 259 DDEEITQDDAWTVIGAYFKDNGLVRQQIESFDDFIGNTIQDIVNDTGEIEVRSRAQHNPG 80
           DDEEITQ+DAW VI AYF++ GLVRQQ++SFD+FI NT+Q+IV+++ +IE+R  +QHNPG
Sbjct: 17  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76

Query: 79  HRLDFAE-VYSRGF 41
           H+ DFAE +Y   F
Sbjct: 77  HQSDFAETIYKISF 90


>emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  103 bits (257), Expect = 1e-20
 Identities = 46/74 (62%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
 Frame = -3

Query: 259 DDEEITQDDAWTVIGAYFKDNGLVRQQIESFDDFIGNTIQDIVNDTGEIEVRSRAQHNPG 80
           DDEEITQ+DAW VI AYF++ GLVRQQ++SFD+FI NT+Q+IV+++ +IE+R  +QHNPG
Sbjct: 17  DDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 76

Query: 79  HRLDFAE-VYSRGF 41
           H+ DFAE +Y   F
Sbjct: 77  HQSDFAETIYKISF 90