BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039218
         (697 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ34617.1| unnamed protein product [Thellungiella halophila]      92   1e-16
ref|XP_002884884.1| KH domain-containing protein [Arabidopsis ly...    91   3e-16
emb|CBI30026.3| unnamed protein product [Vitis vinifera]               88   1e-15
ref|NP_196295.1| zinc finger CCCH domain-containing protein 52 [...    87   3e-15
ref|XP_002873278.1| KH domain-containing protein [Arabidopsis ly...    86   5e-15

>dbj|BAJ34617.1| unnamed protein product [Thellungiella halophila]
          Length = 244

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 71/233 (30%), Positives = 102/233 (43%), Gaps = 58/233 (24%)
 Frame = +2

Query: 119 GGSRKTRRS-DDYLEELGPNKNPKQVDARGRKRPFSLTECPFGEGCQFLHVVPCGYNDIA 295
           GG +K+++  + Y   LG    P         + FS + CPFGE C FLH VP GYN +A
Sbjct: 19  GGFKKSKQEMESYSTGLGSKSKPCT-------KFFSTSGCPFGENCHFLHYVPGGYNAVA 71

Query: 296 TVT-------------------------------------------LAVDESFAREFTRD 346
            +T                                           ++VD S A      
Sbjct: 72  QLTNMGPPMPQVSRNMQGPVGGGRFSGRGESGPGHVSSFGASATAKISVDASLAGAIIGK 131

Query: 347 NHLTSKVFTSFSGAKLFIKDHVSESSLKNIEIQGTPHGIG----IVRELLDQQSY----- 499
             ++SK     +GAKL I+DH  + +LKNIE++GT   I     +VREL+ + +      
Sbjct: 132 GGVSSKQICRQTGAKLSIQDHERDPNLKNIELEGTFEQINEASAMVRELIGRLNSAARKP 191

Query: 500 -----GRFQLEEICPGSKFKTQGCCHFYQGYCRNGARCHYAHGKEEMRKNYFA 643
                G     +  PGS FKT+ C  F +G C  G RCH+AHG+ E+R++  A
Sbjct: 192 PGGGGGIGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRRSGIA 244


>ref|XP_002884884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330724|gb|EFH61143.1| KH domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 245

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 69/232 (29%), Positives = 101/232 (43%), Gaps = 60/232 (25%)
 Frame = +2

Query: 119 GGSRKTRRS-DDYLEELGPNKNPKQVDARGRKRPFSLTECPFGEGCQFLHVVPCGYNDIA 295
           GG +K+++  + Y   LG    P         + FS + CPFGE C FLH VP GYN +A
Sbjct: 19  GGYKKSKQEMESYSTGLGSKSKPCT-------KFFSTSGCPFGENCHFLHYVPGGYNAVA 71

Query: 296 TVT-------------------------------------------LAVDESFAREFTRD 346
            +T                                           ++VD S A      
Sbjct: 72  QMTNMGPPMPQVSRNMQGSGNGGRFSGRGESGPGHVSSFGASATAKISVDASLAGAIIGK 131

Query: 347 NHLTSKVFTSFSGAKLFIKDHVSESSLKNIEIQGTPHGIG----IVRELLDQQSY----- 499
             ++SK     +GAKL I+DH  + +LKNIE++GT   I     +VREL+ + +      
Sbjct: 132 GGVSSKQICRQTGAKLSIQDHERDPNLKNIELEGTFEQINEASAMVRELIGRLNSAAKKP 191

Query: 500 -------GRFQLEEICPGSKFKTQGCCHFYQGYCRNGARCHYAHGKEEMRKN 634
                  G     +  PGS FKT+ C  + +G C  G RCH+AHG+ E+R++
Sbjct: 192 PGGLGGGGMGSEGKPHPGSNFKTKICERYSKGNCTFGDRCHFAHGEAELRRS 243


>emb|CBI30026.3| unnamed protein product [Vitis vinifera]
          Length = 239

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 56/230 (24%)
 Frame = +2

Query: 113 ASGGSRKTRRSDDYLEE-LGPNKNPKQVDARGRKRPFSLTECPFGEGCQFLHVVPCGYND 289
           A+GG +K+++  + L   +G    P         + FS + CPFGE C FLH VP GYN 
Sbjct: 15  ANGGFKKSKQEVESLSTGIGSKSKPCT-------KFFSTSGCPFGESCHFLHYVPGGYNA 67

Query: 290 IATVT-------------------------------------------LAVDESFAREFT 340
           +A +T                                           ++VD S A    
Sbjct: 68  VAQMTNQAPILPPASRNMAGPPPPVPNGSSMPAVKSPAASFGASATAKISVDASLAGAII 127

Query: 341 RDNHLTSKVFTSFSGAKLFIKDHVSESSLKNIEIQGTPHGI----GIVRELLDQQSY--G 502
               + SK     +GAKL I++H S+ +L+NIE++GT   I     +VREL+   S   G
Sbjct: 128 GKGGVNSKQICRQTGAKLSIREHDSDPNLRNIELEGTFEQIKEASAMVRELIVNISAMPG 187

Query: 503 RFQLE------EICPGSKFKTQGCCHFYQGYCRNGARCHYAHGKEEMRKN 634
             +        +  P S +KT+ C +F +G C  G RCH+AHG  E+RK+
Sbjct: 188 HARTTAMPGGGQAPPASNYKTKLCDNFTKGSCTFGERCHFAHGAGELRKS 237


>ref|NP_196295.1| zinc finger CCCH domain-containing protein 52 [Arabidopsis
           thaliana] gi|75262408|sp|Q9FG30.1|C3H52_ARATH RecName:
           Full=Zinc finger CCCH domain-containing protein 52;
           Short=AtC3H52 gi|9759305|dbj|BAB09811.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|26451009|dbj|BAC42611.1| unknown protein [Arabidopsis
           thaliana] gi|28950801|gb|AAO63324.1| At5g06770
           [Arabidopsis thaliana] gi|332003680|gb|AED91063.1| zinc
           finger CCCH domain-containing protein 52 [Arabidopsis
           thaliana]
          Length = 240

 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 63/196 (32%), Positives = 88/196 (44%), Gaps = 54/196 (27%)
 Frame = +2

Query: 218 FSLTECPFGEGCQFLHVVPCGYNDIATVT------------------------------- 304
           FS + CPFG+ C FLH VP GYN  A +T                               
Sbjct: 46  FSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRFSGRGDPGS 105

Query: 305 ------------LAVDESFAREFTRDNHLTSKVFTSFSGAKLFIKDHVSESSLKNIEIQG 448
                       ++VD S A        + SK     +GAKL IKDH  + +LK IE++G
Sbjct: 106 GPVSIFGASTSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEG 165

Query: 449 TPHGI----GIVRELLDQ-------QSYGRFQLEEICPGSKFKTQGCCHFYQGYCRNGAR 595
           T   I    G+VREL+ +       Q  G  + +   PGS +KT+ C  + +G C  G R
Sbjct: 166 TFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPH-PGSNYKTKICDRYSKGNCTYGDR 224

Query: 596 CHYAHGKEEMRKNYFA 643
           CH+AHG+ E+R++  A
Sbjct: 225 CHFAHGESELRRSGIA 240


>ref|XP_002873278.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319115|gb|EFH49537.1| KH domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 241

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 55/197 (27%)
 Frame = +2

Query: 218 FSLTECPFGEGCQFLHVVPCGYNDIATVT------------------------------- 304
           FS + CPFG+ C FLH VP GYN  A +T                               
Sbjct: 46  FSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVAQVSRNMQGFGGPGGRFSGRGDQGP 105

Query: 305 -------------LAVDESFAREFTRDNHLTSKVFTSFSGAKLFIKDHVSESSLKNIEIQ 445
                        ++VD S A        + SK     +GAKL IKDH  + +LK IE++
Sbjct: 106 GPVSIFGASATSKISVDASLAGAIIGKGGIHSKQICRQTGAKLSIKDHERDPNLKIIELE 165

Query: 446 GTPHGI----GIVRELLDQ-------QSYGRFQLEEICPGSKFKTQGCCHFYQGYCRNGA 592
           GT   I    G+VREL+ +       Q  G  + +   PGS +KT+ C  + +G C  G 
Sbjct: 166 GTFEQINVASGMVRELIGRLGSAKKPQGIGGPEGKPH-PGSNYKTKICDRYSKGNCTYGD 224

Query: 593 RCHYAHGKEEMRKNYFA 643
           RCH+AHG+ E+R++  A
Sbjct: 225 RCHFAHGEAELRRSGIA 241