BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039074
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi...   118   7e-25
ref|XP_003623229.1| Pentatricopeptide repeat-containing protein ...    73   2e-11
ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09
emb|CBI35592.3| unnamed protein product [Vitis vinifera]               67   2e-09
emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]    67   2e-09

>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  118 bits (295), Expect = 7e-25
 Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
 Frame = +3

Query: 108 MIIKHCLNPQFHLFIPSLRLVNPLVKLFSTNVVVDEEINRVNVKLRDLCK--SSKLVDAF 281
           M++K    P  H  +PS  L      LFS+++ +    N +  +LR LC+  +S+  +A 
Sbjct: 1   MVLKPLFKPHLHPHLPSQSLYL-CFNLFSSSIPIPISPNDLETQLRSLCQKPNSQFTEAV 59

Query: 282 SFFHNVVELGLVPSEGTCNYLVQALARSNEYNMVFEVYRRMTRVGISPNFLSLGALIEFY 461
           S FH+ ++  L+PS  TCN+LV ALARS  Y + F VYRRMT V + P+F SL ALIE +
Sbjct: 60  SLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECF 119

Query: 462 VQEGKPELAIGVLGLIVKRSYSMNGYL 542
               KP+L  GV+GL++KR +++N ++
Sbjct: 120 ADAQKPQLGFGVVGLVLKRGFTVNVFI 146


>ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498244|gb|AES79447.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = +3

Query: 258 SSKLVDAFSFFHNVVE--LGLVPSEGTCNYLVQALARSNEYNMVFEVYRRMTRVGISPNF 431
           S  L ++ S FH+ ++     +PS  +CN L+  L ++  Y+ V  V+ +M  V + P F
Sbjct: 35  SPALSESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCF 94

Query: 432 LSLGALIEFYVQEGKPELAIGVLGLIVKRSYSMNGY 539
            SL ALIE +V   KP  A GVLGLI+KR + +N Y
Sbjct: 95  TSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVY 130


>ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 54/105 (51%)
 Frame = +3

Query: 219 INRVNVKLRDLCKSSKLVDAFSFFHNVVELGLVPSEGTCNYLVQALARSNEYNMVFEVYR 398
           I   N  +  LC+ SK   AF     VV+ GL+P   T N LV    +  + NM F ++ 
Sbjct: 382 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 441

Query: 399 RMTRVGISPNFLSLGALIEFYVQEGKPELAIGVLGLIVKRSYSMN 533
            M   G+ P+  +  ALI+   + G+ E A G+LG +VK+  S++
Sbjct: 442 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 486


>emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 54/105 (51%)
 Frame = +3

Query: 219 INRVNVKLRDLCKSSKLVDAFSFFHNVVELGLVPSEGTCNYLVQALARSNEYNMVFEVYR 398
           I   N  +  LC+ SK   AF     VV+ GL+P   T N LV    +  + NM F ++ 
Sbjct: 405 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 464

Query: 399 RMTRVGISPNFLSLGALIEFYVQEGKPELAIGVLGLIVKRSYSMN 533
            M   G+ P+  +  ALI+   + G+ E A G+LG +VK+  S++
Sbjct: 465 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 509


>emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 54/105 (51%)
 Frame = +3

Query: 219 INRVNVKLRDLCKSSKLVDAFSFFHNVVELGLVPSEGTCNYLVQALARSNEYNMVFEVYR 398
           I   N  +  LC+ SK   AF     VV+ GL+P   T N LV    +  + NM F ++ 
Sbjct: 339 IRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN 398

Query: 399 RMTRVGISPNFLSLGALIEFYVQEGKPELAIGVLGLIVKRSYSMN 533
            M   G+ P+  +  ALI+   + G+ E A G+LG +VK+  S++
Sbjct: 399 SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLD 443