BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00039025
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB47537.2| retrotransposon protein, putative, unclassified [...   165   4e-39
gb|AAV59370.1| hypothetical protein [Oryza sativa Japonica Group]     137   9e-31
gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sa...   132   3e-29
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]...   125   5e-27
gb|AAM22735.1|AC092388_19 putative gag/pol polyprotein [Oryza sa...   124   6e-27

>gb|ABB47537.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1172

 Score =  165 bits (417), Expect = 4e-39
 Identities = 87/174 (50%), Positives = 110/174 (63%), Gaps = 31/174 (17%)
 Frame = +3

Query: 3    VTRMETVRLLLALAAENEWQVHHLDVKSAFLNGDLQEVVYVTQPRGFEKEEEEHKVYRLY 182
            V R++TVR +LA+AA+  WQVHHLDVKSAFLNGDL+E VYV+Q  GF ++ +EH VY L 
Sbjct: 794  VARLDTVRAILAVAADRRWQVHHLDVKSAFLNGDLEEEVYVSQLEGFVEKGKEHLVYELS 853

Query: 183  KALYGLRQAPRAWYTRLSK-------------------------------LSYYIGIEVY 269
            KALYGLRQAPRAW TRL +                               L+YY+GIEV 
Sbjct: 854  KALYGLRQAPRAWNTRLDRSMKELGFSRPSEITAFKQQMMGEFEISDLGLLTYYLGIEVL 913

Query: 270  QGNGYIELKQTAYAKKILEKAGMGECNSVRYPMEPKVQMHKDENGKLVNPTEFK 431
            QG   I +KQ AYA+KIL + GM +CNS   P+E + Q+HK   G  V+PTE++
Sbjct: 914  QGTDGIAIKQAAYARKILTQFGMLDCNSTSIPIEHRSQLHKVAEGSTVDPTEYR 967


>gb|AAV59370.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1332

 Score =  137 bits (345), Expect = 9e-31
 Identities = 85/206 (41%), Positives = 107/206 (51%), Gaps = 63/206 (30%)
 Frame = +3

Query: 3    VTRMETVRLLLALAAENEWQVHHLDVKSAFLNGDLQEVVYVTQPRGFEKEEEEHKVYRLY 182
            V R+ETVR LLALAA+  WQVHH+DVKSAFLNGDL+E VYV+QP GFE   EE KVYRL+
Sbjct: 904  VARIETVRSLLALAAQEGWQVHHMDVKSAFLNGDLEEEVYVSQPLGFEVTGEEAKVYRLH 963

Query: 183  KALYGLRQAPRAWYTRLSKLSYYIGIE-------VYQGNGY------------------- 284
            KALYGLRQAPRAWY +L      +G E       VY+ N                     
Sbjct: 964  KALYGLRQAPRAWYAKLDATLIKMGFEGSTSDPAVYKRNSEHSTLIVGVYVDDLVIIGSQ 1023

Query: 285  ----------------------------IELKQT---------AYAKKILEKAGMGECNS 353
                                        I++KQT         AYA  IL+K GM  CN 
Sbjct: 1024 VSVIQGFKVEMQKEFKMSDLGLLSFYLGIQVKQTATGIALNQSAYALNILKKNGMDGCNP 1083

Query: 354  VRYPMEPKVQMHKDENGKLVNPTEFK 431
             + PME ++++ K+    LV+ T+++
Sbjct: 1084 CQVPMEARLRLSKESTNSLVDATQYR 1109


>gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433560|gb|AAP55058.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1168

 Score =  132 bits (332), Expect = 3e-29
 Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 33/176 (18%)
 Frame = +3

Query: 3    VTRMETVRLLLALAAENEWQVHHLDVKSAFLNGDLQEVVYVTQPRGFEKEEEEHKVYRLY 182
            V RME+VRLL ALAA   W VHH+DVKSAFLNGDL+E VYV QP GF    +E KV RL+
Sbjct: 834  VARMESVRLL-ALAAREGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLH 892

Query: 183  KALYGLRQAPRAWYTRLSKLSYYIGIE-------VY-QGNG--------YIE-------- 290
            KALYGLRQAPRAW  +L      +G E       +Y +GNG        Y++        
Sbjct: 893  KALYGLRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYRRGNGGNALLVGVYVDDLVITGTK 952

Query: 291  ---------LKQTAYAKKILEKAGMGECNSVRYPMEPKVQMHKDENGKLVNPTEFK 431
                     L+QTAYAK+++E AG+ +CN    PME ++++ +D   + V+ T+++
Sbjct: 953  DAEDNSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRDSTAEEVDATQYR 1008


>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108710383|gb|ABF98178.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1339

 Score =  125 bits (313), Expect = 5e-27
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
 Frame = +3

Query: 3    VTRMETVRLLLALAAENEWQVHHLDVKSAFLNGDLQEVVYVTQPRGFEKEEEEHKVYRLY 182
            V R++TVR +L +A +  WQVHHLDVKSAFLNGDL+E VYV+QP GF ++ +EH VY+L 
Sbjct: 954  VARLDTVRAILPVAVDRRWQVHHLDVKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLS 1013

Query: 183  KALYGLRQAPRAWYTRLSKLSYYIGIE-------VY-QGNG--------YIE-------- 290
            KALYGLRQAPRAW TRL +    +G         VY +G G        Y++        
Sbjct: 1014 KALYGLRQAPRAWNTRLDRSMKELGFSRCAQEQAVYTRGTGSTGIIVGVYVDDLIVTGES 1073

Query: 291  -LKQTAYAKKILEKAGMGECNSVRYPMEPKVQMHKDENGKLVNPTEFK 431
                TA+ ++++ +  M +   + Y +   +++HKD  G  V+PTE++
Sbjct: 1074 PSDITAFKQQMMGEFEMSDLGLLTYYL--GIELHKDAQGSTVDPTEYR 1119


>gb|AAM22735.1|AC092388_19 putative gag/pol polyprotein [Oryza sativa Japonica Group]
          Length = 1213

 Score =  124 bits (312), Expect = 6e-27
 Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 35/178 (19%)
 Frame = +3

Query: 3    VTRMETVRLLLALAAENEWQVHHLDVKSAFLNGDLQEVVYVTQPRGFEKEEEEHKVYRLY 182
            V RME+VRLL ALAA+  W VHH+DVKSAFLNGDL+EV YV QP GF    +E  V RL+
Sbjct: 920  VARMESVRLL-ALAAQEGWGVHHMDVKSAFLNGDLKEV-YVHQPPGFVIPGKEGNVLRLH 977

Query: 183  KALYGLRQAPRAWYTRLSKLSYYIGI---------------------------------- 260
            KALYGLRQAPRAW  +L      +G                                   
Sbjct: 978  KALYGLRQAPRAWNAKLDSTLKGMGFEQSPHEAAIYQRGNGGNALLVGVYVDDLITGTKN 1037

Query: 261  -EVYQGNGYIELKQTAYAKKILEKAGMGECNSVRYPMEPKVQMHKDENGKLVNPTEFK 431
             EVYQ +  I L+QTAYAK+++E AG+ +CN    PME ++++ +D   + V+ T+++
Sbjct: 1038 AEVYQDDSGITLRQTAYAKRVVELAGLTDCNPALTPME-RLKLSRDSTTEEVDATQYR 1094