BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00038671
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528839.1| pentatricopeptide repeat-containing protein,...   161   4e-38
ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...   159   2e-37
emb|CBI31172.3| unnamed protein product [Vitis vinifera]              159   2e-37
emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]   159   2e-37
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ...   157   1e-36

>ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531751|gb|EEF33573.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 393

 Score =  161 bits (408), Expect = 4e-38
 Identities = 77/104 (74%), Positives = 87/104 (83%)
 Frame = +3

Query: 102 IDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVLPI 281
           +D VRKVFE+MP RD+VSWNTVIAG A NGM+ EAL M+REMGN  LKPD +TLSSVLPI
Sbjct: 137 VDSVRKVFEMMPKRDLVSWNTVIAGNAHNGMHEEALVMVREMGNVNLKPDSFTLSSVLPI 196

Query: 282 FAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANCTRTRD 413
           FAEYV+V +G+EIHGY +RHG   DVFIGSSLIDMYA CTR  D
Sbjct: 197 FAEYVNVDKGKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVED 240



 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 49/117 (41%), Positives = 74/117 (63%)
 Frame = +3

Query: 48  GSGLVSDDWKLFTRSDLVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREM 227
           GS L+     ++ +   V D +R VF ++P RD +SWN++IAG  +N +++E LR  R+M
Sbjct: 225 GSSLID----MYAKCTRVEDSLR-VFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFFRQM 279

Query: 228 GNAGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANC 398
             A +KP   + SS+LP  A    +  GR++HGY++R  F  +VFI SSL+DMYA C
Sbjct: 280 LKANVKPRQVSFSSILPACAHLTTLNLGRQLHGYILRVRFDNNVFIASSLVDMYAKC 336


>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/120 (63%), Positives = 95/120 (79%)
 Frame = +3

Query: 54  GLVSDDWKLFTRSDLVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGN 233
           G  SD +    +    +  +RKVFE+MP RDIVSWNTVI+G A+NGM+ +AL M+REMGN
Sbjct: 170 GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN 229

Query: 234 AGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANCTRTRD 413
           A L+PD +TLSSVLPIFAEYV++L+G+EIHGY +R+G+  DVFIGSSLIDMYA CTR  D
Sbjct: 230 ADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDD 289



 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
 Frame = +3

Query: 15  GRYERGGMYRNGSGLVSDDWKLFTRSDLV--------IDGVRKVFEVMPVRDIVSWNTVI 170
           G+   G   RNG      D  +F  S L+        +D   +VF ++P  D +SWN++I
Sbjct: 255 GKEIHGYAIRNGY-----DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 171 AGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFG 350
           AG  +NGM++E L+  ++M  A +KP+  + SS++P  A    +  G+++HGY++R  F 
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 351 EDVFIGSSLIDMYANCTRTR 410
            +VFI S+L+DMYA C   R
Sbjct: 370 GNVFIASALVDMYAKCGNIR 389


>emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/120 (63%), Positives = 95/120 (79%)
 Frame = +3

Query: 54  GLVSDDWKLFTRSDLVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGN 233
           G  SD +    +    +  +RKVFE+MP RDIVSWNTVI+G A+NGM+ +AL M+REMGN
Sbjct: 170 GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN 229

Query: 234 AGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANCTRTRD 413
           A L+PD +TLSSVLPIFAEYV++L+G+EIHGY +R+G+  DVFIGSSLIDMYA CTR  D
Sbjct: 230 ADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDD 289



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
 Frame = +3

Query: 15  GRYERGGMYRNGSGLVSDDWKLFTRSDLV--------IDGVRKVFEVMPVRDIVSWNTVI 170
           G+   G   RNG      D  +F  S L+        +D   +VF ++P  D +SWN++I
Sbjct: 255 GKEIHGYAIRNGY-----DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 171 AGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMR 338
           AG  +NGM++E L+  ++M  A +KP+  + SS++P  A    +  G+++HGY++R
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365


>emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/120 (63%), Positives = 95/120 (79%)
 Frame = +3

Query: 54  GLVSDDWKLFTRSDLVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGN 233
           G  SD +    +    +  +RKVFE+MP RDIVSWNTVI+G A+NGM+ +AL M+REMGN
Sbjct: 130 GKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN 189

Query: 234 AGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANCTRTRD 413
           A L+PD +TLSSVLPIFAEYV++L+G+EIHGY +R+G+  DVFIGSSLIDMYA CTR  D
Sbjct: 190 ADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDD 249



 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
 Frame = +3

Query: 15  GRYERGGMYRNGSGLVSDDWKLFTRSDLV--------IDGVRKVFEVMPVRDIVSWNTVI 170
           G+   G   RNG      D  +F  S L+        +D   +VF ++P  D +SWN++I
Sbjct: 215 GKEIHGYAIRNGY-----DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 171 AGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFG 350
           AG  +NGM++E L+  ++M  A +KP+  + SS++P  A    +  G+++HGY++R  F 
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 351 EDVFIGSSLIDMYANCTRTR 410
            +VFI S+L+DMYA C   R
Sbjct: 330 GNVFIASALVDMYAKCGNIR 349


>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329263|gb|EFH59682.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 679

 Score =  157 bits (396), Expect = 1e-36
 Identities = 74/106 (69%), Positives = 90/106 (84%)
 Frame = +3

Query: 96  LVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVL 275
           L ID VRKVFE+MP +D+VS+NTVIAGYA++GMY +ALRM+REMG + LKPD +TLSSVL
Sbjct: 154 LGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213

Query: 276 PIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANCTRTRD 413
           PIF+EYVDVL+G+EIHGYV+R G   DV+IGSSL+DMYA   R  D
Sbjct: 214 PIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 259



 Score =  104 bits (260), Expect = 6e-21
 Identities = 51/117 (43%), Positives = 77/117 (65%)
 Frame = +3

Query: 48  GSGLVSDDWKLFTRSDLVIDGVRKVFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREM 227
           GS LV     ++ +S  + D  R VF  +  RD +SWN+++AGY +NG YNEALR+ R+M
Sbjct: 244 GSSLVD----MYAKSARIEDSER-VFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQM 298

Query: 228 GNAGLKPDVYTLSSVLPIFAEYVDVLRGREIHGYVMRHGFGEDVFIGSSLIDMYANC 398
            +A ++P     SSV+P  A    +  G+++HGYV+R GFG ++FI S+L+DMY+ C
Sbjct: 299 VSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKC 355



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/91 (28%), Positives = 50/91 (54%)
 Frame = +3

Query: 120 VFEVMPVRDIVSWNTVIAGYARNGMYNEALRMIREMGNAGLKPDVYTLSSVLPIFAEYVD 299
           VF+ +    +++W +VI  +    +++ AL    EM  +G  PD     SVL      +D
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 300 VLRGREIHGYVMRHGFGEDVFIGSSLIDMYA 392
           +  G  +HG+++R G   D++ G++L++MY+
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYS 151