BLASTX nr result
ID: Cnidium21_contig00038317
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00038317 (532 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi... 171 5e-41 ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi... 151 5e-35 ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar... 150 9e-35 ref|XP_002892331.1| pentatricopeptide repeat-containing protein ... 150 1e-34 ref|XP_004139374.1| PREDICTED: pentatricopeptide repeat-containi... 148 4e-34 >ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed protein product [Vitis vinifera] Length = 343 Score = 171 bits (434), Expect = 5e-41 Identities = 85/125 (68%), Positives = 102/125 (81%), Gaps = 1/125 (0%) Frame = +3 Query: 3 IRRINVVVELVKEMV-KFGLTPRQEIVVKVIAAMRARKDVWRAVEIVELLQSEDILVGFE 179 +RR EL+KEMV K GLTPRQ V+ ++AA+RA+K++W+AVE++E L+ ED GF Sbjct: 219 MRRTTDATELMKEMVAKIGLTPRQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFA 278 Query: 180 SYESVLEGCLECGEYVLAGKVVMGMTNRGFIPYIRARQKVVEGLANAGDWKLAYAVRQRF 359 SYESVLEGCL C E+VLAGKVVMGMT RGFIPYI RQKVVEGLAN G+WKLA AVRQRF Sbjct: 279 SYESVLEGCLACHEFVLAGKVVMGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRF 338 Query: 360 AELKS 374 A+L+S Sbjct: 339 ADLRS 343 >ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270-like [Glycine max] Length = 342 Score = 151 bits (382), Expect = 5e-35 Identities = 74/125 (59%), Positives = 98/125 (78%), Gaps = 1/125 (0%) Frame = +3 Query: 3 IRRINVVVELVKEMV-KFGLTPRQEIVVKVIAAMRARKDVWRAVEIVELLQSEDILVGFE 179 +R+ ++L+K+MV ++GLTP Q +VK++AA+RA +++W+AVE++E L+ E VGFE Sbjct: 218 VRKTAKALDLMKQMVVQYGLTPGQGTLVKLLAALRANREIWKAVEMIEFLEKEGNSVGFE 277 Query: 180 SYESVLEGCLECGEYVLAGKVVMGMTNRGFIPYIRARQKVVEGLANAGDWKLAYAVRQRF 359 SYE V+EGCLE EYVLA KV GMT RGFIPYIR RQK++EGLA+ +W LA AVRQRF Sbjct: 278 SYELVIEGCLEKREYVLAAKVATGMTERGFIPYIRVRQKIIEGLASIDEWNLACAVRQRF 337 Query: 360 AELKS 374 A LKS Sbjct: 338 AALKS 342 >ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains similarity to an unknown protein F23N19.4 gi|6630464 from Arabidopsis thaliana gb|AC007190 and contains multiple PPR PF|01535 repeats. EST gb|T44174 comes from this gene [Arabidopsis thaliana] gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis thaliana] gi|20465473|gb|AAM20196.1| unknown protein [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1| unknown [Arabidopsis thaliana] gi|332189849|gb|AEE27970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 343 Score = 150 bits (380), Expect = 9e-35 Identities = 74/124 (59%), Positives = 99/124 (79%), Gaps = 1/124 (0%) Frame = +3 Query: 6 RRINVVVELVKEMV-KFGLTPRQEIVVKVIAAMRARKDVWRAVEIVELLQSEDILVGFES 182 R+ VV++VKEMV K G++PR+ ++ KV AA+RA +++W+A+E++E ++S D V FES Sbjct: 220 RKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIEFVESRDYPVEFES 279 Query: 183 YESVLEGCLECGEYVLAGKVVMGMTNRGFIPYIRARQKVVEGLANAGDWKLAYAVRQRFA 362 YE V+EGCLE EY+LAGKVVM MT+RGFIPYI+ RQKVVE L N G+WKLA VRQR + Sbjct: 280 YEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIGEWKLACTVRQRVS 339 Query: 363 ELKS 374 EL+S Sbjct: 340 ELRS 343 >ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338173|gb|EFH68590.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 343 Score = 150 bits (379), Expect = 1e-34 Identities = 73/124 (58%), Positives = 100/124 (80%), Gaps = 1/124 (0%) Frame = +3 Query: 6 RRINVVVELVKEMV-KFGLTPRQEIVVKVIAAMRARKDVWRAVEIVELLQSEDILVGFES 182 R+ N VV++VKEMV K G++PR+ ++ KV AA+RA +++W+A+E++E ++S D V FES Sbjct: 220 RKTNDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMIEFVESRDYPVEFES 279 Query: 183 YESVLEGCLECGEYVLAGKVVMGMTNRGFIPYIRARQKVVEGLANAGDWKLAYAVRQRFA 362 YE V+EGCLE EY+LAGK+VM MT+RGFIPYI+ RQKVVE L + G+WKLA VRQR + Sbjct: 280 YEVVVEGCLEVREYILAGKMVMRMTDRGFIPYIKVRQKVVERLISIGEWKLACTVRQRLS 339 Query: 363 ELKS 374 EL+S Sbjct: 340 ELRS 343 >ref|XP_004139374.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270-like [Cucumis sativus] gi|449483078|ref|XP_004156487.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270-like [Cucumis sativus] Length = 343 Score = 148 bits (374), Expect = 4e-34 Identities = 77/125 (61%), Positives = 97/125 (77%), Gaps = 1/125 (0%) Frame = +3 Query: 3 IRRINVVVELVKEMV-KFGLTPRQEIVVKVIAAMRARKDVWRAVEIVELLQSEDILVGFE 179 +RR + VEL+KEMV K L PRQ + V+AA+R ++V RAVEI+ELL+ + VGFE Sbjct: 219 VRRTDKAVELLKEMVVKVKLMPRQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFE 278 Query: 180 SYESVLEGCLECGEYVLAGKVVMGMTNRGFIPYIRARQKVVEGLANAGDWKLAYAVRQRF 359 SYE ++EGCLEC EY+LAGKV MGMT+RGFIPYI+ RQ+VVEGLA G+ +LA AVR+RF Sbjct: 279 SYELLVEGCLECREYILAGKVTMGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRF 338 Query: 360 AELKS 374 EL S Sbjct: 339 VELGS 343