BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00038219
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group...   110   1e-29
gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa]                      115   1e-29
gb|ABA94321.1| retrotransposon protein, putative, unclassified [...   110   1e-29
emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]         110   1e-29
emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]   112   8e-29

>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711651|gb|ABF99446.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 1393

 Score =  110 bits (276), Expect(2) = 1e-29
 Identities = 52/99 (52%), Positives = 68/99 (68%)
 Frame = +2

Query: 68  PQISLGEAVMTAAYLINRLPSCVLQFRTPLSFVPAPSSHPLPLRLFGSVCFVHNHSPSRD 247
           P+    EAVMTAAYLINR+PS +L  ++P   +       +P ++FG VCFV +H PS  
Sbjct: 554 PKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPPKVFGCVCFVRDHRPSVG 613

Query: 248 KLDSRALRCVFIGYSPTQKGYKCYHPPSRRTFVSHDVTF 364
           KLD  A++CVF+GY+ +QKGYKC+ P  RR FVS DVTF
Sbjct: 614 KLDPHAVKCVFVGYASSQKGYKCWDPIGRRLFVSMDVTF 652



 Score = 43.9 bits (102), Expect(2) = 1e-29
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   VAERKNGHLQHVARSLMLTMHAPKYLW 83
           VAERKN HL  VARSLM  M+ PKYLW
Sbjct: 532 VAERKNRHLLEVARSLMFQMNVPKYLW 558


>gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa]
          Length = 1180

 Score =  115 bits (287), Expect(2) = 1e-29
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 4/103 (3%)
 Frame = +2

Query: 68  PQISLGEAVMTAAYLINRLPSCVLQFRTPL----SFVPAPSSHPLPLRLFGSVCFVHNHS 235
           P+   GEAV+ A++LINRLPS  LQ R PL    ++V  PSS+ LP R+FG V +VH + 
Sbjct: 362 PKYLWGEAVLCASHLINRLPSAPLQGRVPLEVLSNYVSIPSSNTLPARVFGCVAYVHLYK 421

Query: 236 PSRDKLDSRALRCVFIGYSPTQKGYKCYHPPSRRTFVSHDVTF 364
             R KLD+RAL+CVF+GY   QKGYKCYHP S++ +V+ DV+F
Sbjct: 422 NQRSKLDARALKCVFVGYGSHQKGYKCYHPQSQKFYVTMDVSF 464



 Score = 39.7 bits (91), Expect(2) = 1e-29
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   VAERKNGHLQHVARSLMLTMHAPKYLW 83
           V+ERKN HL  +ARSL+L+ + PKYLW
Sbjct: 340 VSERKNRHLLDMARSLLLSANMPKYLW 366


>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1133

 Score =  110 bits (276), Expect(2) = 1e-29
 Identities = 52/99 (52%), Positives = 68/99 (68%)
 Frame = +2

Query: 68  PQISLGEAVMTAAYLINRLPSCVLQFRTPLSFVPAPSSHPLPLRLFGSVCFVHNHSPSRD 247
           P+    EAVMTAAYLINR+PS +L  ++P   +       +P ++FG VCFV +H PS  
Sbjct: 422 PKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPPKVFGCVCFVRDHRPSVG 481

Query: 248 KLDSRALRCVFIGYSPTQKGYKCYHPPSRRTFVSHDVTF 364
           KLD  A++CVF+GY+ +QKGYKC+ P  RR FVS DVTF
Sbjct: 482 KLDPHAVKCVFVGYASSQKGYKCWDPIERRLFVSMDVTF 520



 Score = 43.9 bits (102), Expect(2) = 1e-29
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   VAERKNGHLQHVARSLMLTMHAPKYLW 83
           VAERKN HL  VARSLM  M+ PKYLW
Sbjct: 400 VAERKNRHLLEVARSLMFQMNVPKYLW 426


>emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]
          Length = 1045

 Score =  110 bits (276), Expect(2) = 1e-29
 Identities = 52/99 (52%), Positives = 68/99 (68%)
 Frame = +2

Query: 68  PQISLGEAVMTAAYLINRLPSCVLQFRTPLSFVPAPSSHPLPLRLFGSVCFVHNHSPSRD 247
           P+    EAVMTAAYLINR+PS +L  ++P   +       +P ++FG VCFV +H PS  
Sbjct: 591 PKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKREFKVPPKVFGCVCFVRDHRPSVG 650

Query: 248 KLDSRALRCVFIGYSPTQKGYKCYHPPSRRTFVSHDVTF 364
           KLD  A++CVF+GY+ +QKGYKC+ P  RR FVS DVTF
Sbjct: 651 KLDPHAVKCVFVGYASSQKGYKCWDPIERRLFVSMDVTF 689



 Score = 43.9 bits (102), Expect(2) = 1e-29
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   VAERKNGHLQHVARSLMLTMHAPKYLW 83
           VAERKN HL  VARSLM  M+ PKYLW
Sbjct: 569 VAERKNRHLLEVARSLMFQMNVPKYLW 595


>emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
          Length = 1505

 Score =  112 bits (281), Expect(2) = 8e-29
 Identities = 54/104 (51%), Positives = 72/104 (69%), Gaps = 5/104 (4%)
 Frame = +2

Query: 68  PQISLGEAVMTAAYLINRLPSCVLQFRTPLSFVPAPS-----SHPLPLRLFGSVCFVHNH 232
           P+   GEA++TA YLINR+P+ +L F+TPL      +     S  LPL++FG   FVH H
Sbjct: 676 PKYLWGEAILTATYLINRMPTRILNFKTPLQVFTNCNPIFRLSSTLPLKIFGCTTFVHIH 735

Query: 233 SPSRDKLDSRALRCVFIGYSPTQKGYKCYHPPSRRTFVSHDVTF 364
             +R KLD RA +CVF+GY+PTQKGYKC+ P S++ FV+ DVTF
Sbjct: 736 DHNRGKLDPRARKCVFVGYAPTQKGYKCFDPISKKLFVTMDVTF 779



 Score = 39.3 bits (90), Expect(2) = 8e-29
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 3   VAERKNGHLQHVARSLMLTMHAPKYLW 83
           +AERKN HL  VAR+L  T   PKYLW
Sbjct: 654 IAERKNKHLLEVARALCFTTKVPKYLW 680