BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00038203
         (277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]    59   5e-07
gb|AAD11595.1| putative reverse transcriptase [Arabidopsis thali...    56   3e-06
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...    55   6e-06
gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]       55   8e-06

>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
          Length = 1262

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   WEEIDSMNVLPSVT--TVADDITTLLKAIDVQKEESRLFVFLNGLDDAYSALRSQLLMQQ 174
           W+E  S   +PS     +      +LK +  +++   +  FL GL D+YSA+RSQLL+Q 
Sbjct: 131 WDEYISYRPIPSCRCGNLNRCSCNILKDLTDRQQSDYVMKFLVGLHDSYSAIRSQLLLQS 190

Query: 175 PLPTVEAVCAMLQQEESQRDVLPIVDI 255
           PLP++  V ++L QEESQR +   V I
Sbjct: 191 PLPSMSRVFSLLLQEESQRSLTNAVGI 217


>gb|AAD11595.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|4263040|gb|AAD15309.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|7270676|emb|CAB77838.1|
           putative reverse transcriptase [Arabidopsis thaliana]
          Length = 374

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/77 (38%), Positives = 48/77 (62%)
 Frame = +1

Query: 1   WEEIDSMNVLPSVTTVADDITTLLKAIDVQKEESRLFVFLNGLDDAYSALRSQLLMQQPL 180
           WEE+ S+  +P   TV D +        +++E +R+  FL GL+D Y A+RSQ+LM++ L
Sbjct: 205 WEELTSLQAIPR--TVEDLL--------IERETNRVIDFLMGLNDCYDAVRSQILMKKTL 254

Query: 181 PTVEAVCAMLQQEESQR 231
           P++  V  M+ Q+E QR
Sbjct: 255 PSLSEVFNMIDQDEIQR 271


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
           (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/77 (37%), Positives = 48/77 (62%)
 Frame = +1

Query: 1   WEEIDSMNVLPSVTTVADDITTLLKAIDVQKEESRLFVFLNGLDDAYSALRSQLLMQQPL 180
           WEE+ S+  +P   TV D +        +++E +R+  FL GL+D Y  +RSQ+LM++ L
Sbjct: 107 WEELTSLQAVPR--TVEDLL--------IERETNRVIDFLMGLNDCYDTVRSQILMKKTL 156

Query: 181 PTVEAVCAMLQQEESQR 231
           P++  V  M+ Q+E+QR
Sbjct: 157 PSLSEVFNMIDQDETQR 173


>gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]
          Length = 1157

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/92 (28%), Positives = 49/92 (53%)
 Frame = +1

Query: 1   WEEIDSMNVLPSVTTVADDITTLLKAIDVQKEESRLFVFLNGLDDAYSALRSQLLMQQPL 180
           W+E++S   +P+ T +       ++     + E ++  FL GL+D +S +++Q+L+  PL
Sbjct: 150 WDELNSHRPIPNCTCIHPCRCESIRLAKYYRTEDQILQFLTGLNDTFSVVKTQILLMDPL 209

Query: 181 PTVEAVCAMLQQEESQRDVLPIVDIEHTAMYS 276
           P +  V +++ QEESQ  V     I   +  S
Sbjct: 210 PPINKVYSLVVQEESQNIVFSTPSISDDSSIS 241