BLASTX nr result

ID: Cnidium21_contig00038012 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00038012
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531766.1| transcription factor, putative [Ricinus comm...    86   3e-15
ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 ...    81   1e-13
ref|XP_002330570.1| high mobility group family [Populus trichoca...    76   3e-12
ref|XP_003592799.1| High mobility group protein B3 [Medicago tru...    65   4e-09
ref|XP_003555635.1| PREDICTED: high mobility group B protein 15-...    61   8e-08

>ref|XP_002531766.1| transcription factor, putative [Ricinus communis]
           gi|223528602|gb|EEF30622.1| transcription factor,
           putative [Ricinus communis]
          Length = 313

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
 Frame = -1

Query: 306 NLLENSANVHHLSAG-----SNLEPGSSVIGTIDAKFDSGYIVTVNLGSEQLKGVIYHTP 142
           NL+  SA V  ++       S L+ GSSV GTID KFD+GY++TV LGSEQLKGV+YH P
Sbjct: 149 NLVNGSATVEGVTVNQFPGSSQLQLGSSVNGTIDGKFDNGYLITVTLGSEQLKGVLYHIP 208

Query: 141 TESQMSQNSNNTAAPRRRSRNR 76
            E  MSQ+S+N+  P RR R R
Sbjct: 209 NEFYMSQSSHNSDLPPRRHRKR 230


>ref|XP_002264357.1| PREDICTED: high mobility group B protein 10 [Vitis vinifera]
           gi|296090037|emb|CBI39856.3| unnamed protein product
           [Vitis vinifera]
          Length = 331

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -1

Query: 321 GSSARNLLENSANVHHLSAGSNLEPGSSVIGTIDAKFDSGYIVTVNLGSEQLKGVIYHTP 142
           GS+   + ++SA  + L     L+PG  V GTID KFD+GY+V+VNLGS+ LKGV+YH P
Sbjct: 163 GSATTPVFQDSATTNDLPVSPRLQPGCLVTGTIDGKFDNGYLVSVNLGSDVLKGVLYHIP 222

Query: 141 -TESQMSQNSNNTAAPRRRSRNR 76
             ES MS++SN +A P  R+  R
Sbjct: 223 NNESHMSRSSNASAVPPPRNWKR 245


>ref|XP_002330570.1| high mobility group family [Populus trichocarpa]
           gi|222872128|gb|EEF09259.1| high mobility group family
           [Populus trichocarpa]
          Length = 316

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 38/75 (50%), Positives = 48/75 (64%)
 Frame = -1

Query: 300 LENSANVHHLSAGSNLEPGSSVIGTIDAKFDSGYIVTVNLGSEQLKGVIYHTPTESQMSQ 121
           LE  A  +  S+   L+ G SV G ID KFD+GY+VTVNLG+ QLKGV+YH P     SQ
Sbjct: 159 LEEGAITNQFSSSQQLQIGCSVSGIIDGKFDNGYLVTVNLGTNQLKGVLYHIPHTFHESQ 218

Query: 120 NSNNTAAPRRRSRNR 76
           +S ++  P RR R R
Sbjct: 219 DSRSSDLPPRRRRKR 233


>ref|XP_003592799.1| High mobility group protein B3 [Medicago truncatula]
           gi|355481847|gb|AES63050.1| High mobility group protein
           B3 [Medicago truncatula]
          Length = 417

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
 Frame = -1

Query: 309 RNLLENSANVHHLSAGSNLEPGSSVIGTIDAKFDSGYIVTVNLGSEQLKGVIYHTP---- 142
           + L  NSA    LS GS+   GS V+G ID KFDSGY+VTV +GSE+LKGV+Y  P    
Sbjct: 168 QQLKVNSAPPEGLSMGSS-SAGSQVVGVIDGKFDSGYLVTVTIGSEKLKGVLYQAPQNPV 226

Query: 141 ---TESQMSQNSNNTAAP----RRRSRNR 76
              +   +  N+NN  A     RRR R +
Sbjct: 227 LPASHHSVPANNNNVTASVGVHRRRRRKK 255


>ref|XP_003555635.1| PREDICTED: high mobility group B protein 15-like [Glycine max]
          Length = 419

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
 Frame = -1

Query: 294 NSANVHHLSAGSNLEPGSSVIGTIDAKFDSGYIVTVNLGSEQLKGVIYHTP-------TE 136
           N+A +    A S+   GS VIG ID KF+SGY+VTV +GSE+LKGV+Y  P       + 
Sbjct: 173 NAAKLPEAMAASSA--GSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLTASH 230

Query: 135 SQMSQNSNNTAAP----RRRSRNR 76
              S N+NN +A     RRR R +
Sbjct: 231 HSASANNNNASASLGVHRRRRRKK 254


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