BLASTX nr result

ID: Cnidium21_contig00037612 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037612
         (684 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307758.1| high mobility group family [Populus trichoca...   135   8e-30
gb|ABK95398.1| unknown [Populus trichocarpa]                          135   8e-30
ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-l...   131   1e-28
gb|ADN34129.1| high mobility group family [Cucumis melo subsp. m...   130   2e-28
ref|XP_002510615.1| transcription factor, putative [Ricinus comm...   125   6e-27

>ref|XP_002307758.1| high mobility group family [Populus trichocarpa]
           gi|222857207|gb|EEE94754.1| high mobility group family
           [Populus trichocarpa]
          Length = 329

 Score =  135 bits (340), Expect = 8e-30
 Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +3

Query: 138 TFEATGTIDAKTDYCYLVSIKLGSETLYGVLYHPNQQKPSESA-NTESAIMPYDLNDXXX 314
           +F A+GTI+ K D  YLVS++LGSE L+GVLYHP+QQ  S S    + AI+PY  N    
Sbjct: 168 SFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQDLSNSIPQYDGAIVPYTPNRRRR 227

Query: 315 XXXXXXXXXXMGPKPNRSGYNFYFAEKHSELKGKCPDKEREFTKMIGKSWTNLSQQEKNV 494
                       PKPNRSGYNF+FAEKH +LK   P++EREFTKMIG+SW++LS +E+ V
Sbjct: 228 RRRSRRSGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWSSLSAEERMV 287

Query: 495 YNEIGVKD 518
           Y  IG+KD
Sbjct: 288 YQNIGLKD 295


>gb|ABK95398.1| unknown [Populus trichocarpa]
          Length = 317

 Score =  135 bits (340), Expect = 8e-30
 Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +3

Query: 138 TFEATGTIDAKTDYCYLVSIKLGSETLYGVLYHPNQQKPSESA-NTESAIMPYDLNDXXX 314
           +F A+GTI+ K D  YLVS++LGSE L+GVLYHP+QQ  S S    + AI+PY  N    
Sbjct: 156 SFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQDLSNSIPQYDGAIVPYTPNRRRR 215

Query: 315 XXXXXXXXXXMGPKPNRSGYNFYFAEKHSELKGKCPDKEREFTKMIGKSWTNLSQQEKNV 494
                       PKPNRSGYNF+FAEKH +LK   P++EREFTKMIG+SW++LS +E+ V
Sbjct: 216 RRRSRRSGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWSSLSAEERMV 275

Query: 495 YNEIGVKD 518
           Y  IG+KD
Sbjct: 276 YQNIGLKD 283


>ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-like [Cucumis sativus]
           gi|449519744|ref|XP_004166894.1| PREDICTED: high
           mobility group B protein 9-like [Cucumis sativus]
          Length = 324

 Score =  131 bits (329), Expect = 1e-28
 Identities = 70/130 (53%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
 Frame = +3

Query: 144 EATGTIDAKTDYCYLVSIKLGSETLYGVLYHPNQQKPSESAN-TESAIMPYDLNDXXXXX 320
           E TGTID K D  YLV++KLGSE L GVLYHP+Q  PS+    + +AI+PY         
Sbjct: 164 EVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSG 223

Query: 321 XXXXXXXXMG----PKPNRSGYNFYFAEKHSELKGKCPDKEREFTKMIGKSWTNLSQQEK 488
                    G    PKPNRSGYNF+FAEKH +LK   P++EREFTKMIG+SW NLS +E+
Sbjct: 224 RRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER 283

Query: 489 NVYNEIGVKD 518
            VY  IG+KD
Sbjct: 284 MVYQNIGLKD 293


>gb|ADN34129.1| high mobility group family [Cucumis melo subsp. melo]
          Length = 324

 Score =  130 bits (328), Expect = 2e-28
 Identities = 70/130 (53%), Positives = 84/130 (64%), Gaps = 5/130 (3%)
 Frame = +3

Query: 144 EATGTIDAKTDYCYLVSIKLGSETLYGVLYHPNQQKPSESAN-TESAIMPYDLNDXXXXX 320
           E TGTID K D  YLV++KLGSE L GVLYHP Q  PS+    + +AI+PY         
Sbjct: 164 EVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSG 223

Query: 321 XXXXXXXXMG----PKPNRSGYNFYFAEKHSELKGKCPDKEREFTKMIGKSWTNLSQQEK 488
                    G    PKPNRSGYNF+FAEKH +LK   P++EREFTKMIG+SW NLS +E+
Sbjct: 224 RRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER 283

Query: 489 NVYNEIGVKD 518
            VY  IG+KD
Sbjct: 284 MVYQNIGLKD 293


>ref|XP_002510615.1| transcription factor, putative [Ricinus communis]
           gi|223551316|gb|EEF52802.1| transcription factor,
           putative [Ricinus communis]
          Length = 338

 Score =  125 bits (315), Expect = 6e-27
 Identities = 67/136 (49%), Positives = 90/136 (66%), Gaps = 9/136 (6%)
 Frame = +3

Query: 138 TFEATGTIDAKTDYCYLVSIKLGSETLYGVLYHPNQQKPSESANTE---SAIMPY----- 293
           +F A GTID K D  YLVS+++GSE L GVLYHP+Q + S S+ ++   +A++PY     
Sbjct: 170 SFSALGTIDGKFDCGYLVSVRVGSEVLSGVLYHPDQPQHSFSSISQCNDNALIPYTGSRR 229

Query: 294 -DLNDXXXXXXXXXXXXXMGPKPNRSGYNFYFAEKHSELKGKCPDKEREFTKMIGKSWTN 470
            D +                PKPNRSGYNF+FAEKH +LK   P++EREFTK+IG+SW+N
Sbjct: 230 RDHSARRRRRRSRRAGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKIIGQSWSN 289

Query: 471 LSQQEKNVYNEIGVKD 518
           LS +E+ VY  IG+KD
Sbjct: 290 LSAEERMVYQNIGLKD 305


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