BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037594
         (760 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510905.1| cleavage and polyadenylation specificity fac...   327   2e-87
emb|CBI24510.3| unnamed protein product [Vitis vinifera]              324   1e-86
ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation spec...   324   1e-86
ref|XP_003548242.1| PREDICTED: cleavage and polyadenylation spec...   310   3e-82
ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arab...   309   5e-82

>ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative
           [Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage
           and polyadenylation specificity factor cpsf, putative
           [Ricinus communis]
          Length = 1461

 Score =  327 bits (838), Expect = 2e-87
 Identities = 168/245 (68%), Positives = 199/245 (81%), Gaps = 8/245 (3%)
 Frame = -3

Query: 713 MSYAAFKMMHSPTAIETCASGYITHS--NHLPKLPSIQTE--DSDWLSIKPNLTASIPNL 546
           MSYAA+KM+H PT IE+CASGYITHS  + +P++P IQT+  DS+W   K  +   +PNL
Sbjct: 1   MSYAAYKMLHWPTGIESCASGYITHSRADFVPQIPPIQTDNLDSEWPPSKRGI-GPMPNL 59

Query: 545 VVTAANVLEVYVVRVSEDSSKGSGA--EPKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 372
           +VTA +VLEVYVVRV ED S+ S +  E KRGG+MDGVSGASLELVCHYRLHGN+ SM +
Sbjct: 60  IVTAGSVLEVYVVRVQEDGSRESRSSRETKRGGLMDGVSGASLELVCHYRLHGNVESMVV 119

Query: 371 LPC-GGVDGRRRDSIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 195
           LP  GG   RRRDSIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEWLHLKRGRE+F 
Sbjct: 120 LPTEGGDSSRRRDSIILAFKDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLKRGRESFA 179

Query: 194 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQA-GGFVGDDSTLGTGGACCARVESSYIISL 18
            GPL+KVDPQGRC G+LVY +QMIIL+AAQA  G VGDD  L +GG+  ARV+SSY+I+L
Sbjct: 180 RGPLLKVDPQGRCGGILVYDMQMIILRAAQASSGLVGDDDALSSGGSISARVQSSYVINL 239

Query: 17  RDLEM 3
           RD++M
Sbjct: 240 RDMDM 244


>emb|CBI24510.3| unnamed protein product [Vitis vinifera]
          Length = 1448

 Score =  324 bits (830), Expect = 1e-86
 Identities = 168/245 (68%), Positives = 196/245 (80%), Gaps = 8/245 (3%)
 Frame = -3

Query: 713 MSYAAFKMMHSPTAIETCASGYITHS--NHLPKLPSIQTED--SDWLSIKPNLTASIPNL 546
           MSYAA+KMMH PT IE CASG++THS  +  P++  IQT+D  S+W + +      +PNL
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQ--IGPLPNL 58

Query: 545 VVTAANVLEVYVVRVSEDSSKGS--GAEPKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 372
           +VTAAN+LEVY+VRV ED S+ S   AE KRGGVM G+SGA+LELVC YRLHGN+ +M +
Sbjct: 59  IVTAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTV 118

Query: 371 LPCGGVDG-RRRDSIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 195
           LP GG D  RRRDSIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEW HLKRG E+F 
Sbjct: 119 LPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFA 178

Query: 194 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYIISL 18
            GPLVKVDPQGRC+GVLVYGLQMIILKA+QAG G VGD+  L +G A  ARVESSY+ISL
Sbjct: 179 RGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISL 238

Query: 17  RDLEM 3
           RDL+M
Sbjct: 239 RDLDM 243


>ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           1-like [Vitis vinifera]
          Length = 1442

 Score =  324 bits (830), Expect = 1e-86
 Identities = 168/245 (68%), Positives = 196/245 (80%), Gaps = 8/245 (3%)
 Frame = -3

Query: 713 MSYAAFKMMHSPTAIETCASGYITHS--NHLPKLPSIQTED--SDWLSIKPNLTASIPNL 546
           MSYAA+KMMH PT IE CASG++THS  +  P++  IQT+D  S+W + +      +PNL
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQ--IGPLPNL 58

Query: 545 VVTAANVLEVYVVRVSEDSSKGS--GAEPKRGGVMDGVSGASLELVCHYRLHGNIYSMAI 372
           +VTAAN+LEVY+VRV ED S+ S   AE KRGGVM G+SGA+LELVC YRLHGN+ +M +
Sbjct: 59  IVTAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTV 118

Query: 371 LPCGGVDG-RRRDSIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFP 195
           LP GG D  RRRDSIIL F DAKISVLEFDDS+HGL TSSMHCFEGPEW HLKRG E+F 
Sbjct: 119 LPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFA 178

Query: 194 TGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYIISL 18
            GPLVKVDPQGRC+GVLVYGLQMIILKA+QAG G VGD+  L +G A  ARVESSY+ISL
Sbjct: 179 RGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISL 238

Query: 17  RDLEM 3
           RDL+M
Sbjct: 239 RDLDM 243


>ref|XP_003548242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           1-like [Glycine max]
          Length = 1447

 Score =  310 bits (793), Expect = 3e-82
 Identities = 155/241 (64%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
 Frame = -3

Query: 713 MSYAAFKMMHSPTAIETCASGYITHS--NHLPKLPSIQTEDSDWLSIKPNLTASIPNLVV 540
           MS+AA+KMM  PT I+ CA+G++THS  + +P  P     D++W S   +   S+PNLVV
Sbjct: 1   MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPD--DLDAEWPSRPRHHVGSLPNLVV 58

Query: 539 TAANVLEVYVVRVSEDSSKGSGAEPKRGGVMDGVSGASLELVCHYRLHGNIYSMAILPCG 360
           TAANVLEVY VR+ ED    + A+ +RG ++DG++GASLELVCHYRLHGN+ +MA+L  G
Sbjct: 59  TAANVLEVYAVRLQEDQPPKAAADSRRGALLDGIAGASLELVCHYRLHGNVETMAVLSIG 118

Query: 359 GVD-GRRRDSIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRETFPTGPL 183
           G D  RRRDSI+LTF DAKISVLE+DDS+HGL TSS+HCFEGPEWLHLKRGRE F  GP+
Sbjct: 119 GGDVSRRRDSIMLTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPV 178

Query: 182 VKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYIISLRDLE 6
           VKVDPQGRC GVL+Y LQMIILKA QAG G VG+D  LG+ GA  AR+ESSY+I+LRDL+
Sbjct: 179 VKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGEDDALGSSGAVAARIESSYMINLRDLD 238

Query: 5   M 3
           M
Sbjct: 239 M 239


>ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp.
           lyrata] gi|297309955|gb|EFH40379.1| hypothetical protein
           ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata]
          Length = 1444

 Score =  309 bits (791), Expect = 5e-82
 Identities = 160/247 (64%), Positives = 190/247 (76%), Gaps = 10/247 (4%)
 Frame = -3

Query: 713 MSYAAFKMMHSPTAIETCASGYITHS--NHLPKLPSIQTED---SDWLSIKPNLTASIPN 549
           MS+AAFKMMH PT +E CASGYITHS  +   ++P +  +D   ++W + K  +   +PN
Sbjct: 1   MSFAAFKMMHWPTGVENCASGYITHSLSDSTLQIPIVSGDDDMEAEWPNHKRGI-GPLPN 59

Query: 548 LVVTAANVLEVYVVRVSEDSSKGSGAEPK---RGGVMDGVSGASLELVCHYRLHGNIYSM 378
           +V+TA N+LEVY+VR  E+ +      PK   RGGVMDGVSG SLELVCHYRLHGN+ S+
Sbjct: 60  VVITAGNILEVYIVRAQEEGNTQELRIPKLVKRGGVMDGVSGVSLELVCHYRLHGNVESI 119

Query: 377 AILPCGGVDGRR-RDSIILTFDDAKISVLEFDDSVHGLHTSSMHCFEGPEWLHLKRGRET 201
           A+LP GG +  + RDSIILTF DAKISVLEFDDS+H L  +SMHCFEGP+WLHLKRGRE+
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179

Query: 200 FPTGPLVKVDPQGRCAGVLVYGLQMIILKAAQAG-GFVGDDSTLGTGGACCARVESSYII 24
           FP GPLVKVDPQGRC GVLVYGLQMIILKA+Q G G VGDD    +GG   ARVESSYII
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKASQVGSGLVGDDDAFSSGGTVSARVESSYII 239

Query: 23  SLRDLEM 3
           +LRDLEM
Sbjct: 240 NLRDLEM 246