BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037424
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...    48   6e-12
emb|CBI17752.3| unnamed protein product [Vitis vinifera]               48   6e-12
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...    41   2e-07
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...    42   8e-07

>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Vitis vinifera]
          Length = 1294

 Score = 48.1 bits (113), Expect(2) = 6e-12
 Identities = 24/51 (47%), Positives = 29/51 (56%)
 Frame = +2

Query: 125 PINDPSAHFFSVAQFLTPGSNCSLIL*RNHGKWGPQVVSDFNKLRRVTPKL 277
           P   P   FF +A+ L+P +       R H  WGP VV+D NKLRRVTP L
Sbjct: 610 PSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNKLRRVTPVL 660



 Score = 47.0 bits (110), Expect(2) = 6e-12
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +3

Query: 9   TVHGGLFTDRRTTNPNKALNLTRPDTTFNLDNWDPN 116
           TVHGGLF++R T NP K   L  P T FNL NWDP+
Sbjct: 567 TVHGGLFSNRTTLNP-KPPTLQNPTTHFNLQNWDPD 601


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 48.1 bits (113), Expect(2) = 6e-12
 Identities = 24/51 (47%), Positives = 29/51 (56%)
 Frame = +2

Query: 125 PINDPSAHFFSVAQFLTPGSNCSLIL*RNHGKWGPQVVSDFNKLRRVTPKL 277
           P   P   FF +A+ L+P +       R H  WGP VV+D NKLRRVTP L
Sbjct: 71  PSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNKLRRVTPVL 121



 Score = 47.0 bits (110), Expect(2) = 6e-12
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +3

Query: 9   TVHGGLFTDRRTTNPNKALNLTRPDTTFNLDNWDPN 116
           TVHGGLF++R T NP K   L  P T FNL NWDP+
Sbjct: 28  TVHGGLFSNRTTLNP-KPPTLQNPTTHFNLQNWDPD 62


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487951|gb|AES69154.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 767

 Score = 41.2 bits (95), Expect(2) = 2e-07
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +3

Query: 9   TVHGGLFTDRRTTNPNKALNLTRPDTTFNLDNWDPNYLN 125
           TV GGLF++R+T  P K  + T+P  +F +  WDP++L+
Sbjct: 27  TVRGGLFSNRKTLTPPKPKS-TKPTNSFQIQKWDPHFLS 64



 Score = 38.5 bits (88), Expect(2) = 2e-07
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
 Frame = +2

Query: 116 LSQPINDPSAH-------FFSVAQFLTPGSNCSLIL*R-NHGKWGPQVVSDFNKLRRVTP 271
           LSQP N PS          FS +  L+P +   L   R N+  WGP VV++ NKLRRVTP
Sbjct: 63  LSQP-NSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNKLRRVTP 121

Query: 272 KL 277
            L
Sbjct: 122 TL 123


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score = 42.4 bits (98), Expect(2) = 8e-07
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 9   TVHGGLFTDRRTTNPNKALNLTRPDT-TFNLDNWDPNYLN 125
           TV GGLF++R+T NPN   +  +P T  FN+ NWDP++L+
Sbjct: 42  TVRGGLFSNRQTLNPNP--SQPKPTTKPFNIKNWDPHFLS 79



 Score = 35.4 bits (80), Expect(2) = 8e-07
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 116 LSQPINDPSAHFFSVAQF-LTPGSNCSL-IL*RNHGKWGPQVVSDFNKLRRVTPKL 277
           LS P ++PS    S A   L+P +   +    RN  KW P V ++ +KLRR+TP L
Sbjct: 78  LSNPNSNPSPSTLSSASLRLSPIARFIVDAFRRNDNKWCPNVAAELSKLRRITPNL 133