BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037423
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   146   2e-33
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   146   2e-33
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              130   1e-28
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   130   1e-28
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   128   4e-28

>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  146 bits (369), Expect = 2e-33
 Identities = 63/99 (63%), Positives = 84/99 (84%)
 Frame = +3

Query: 213 FLNSVCKKAATSFFEQHGLISHQLNSYNDFIKHGIQNVFDSIGEITVQPGYDPSKKGDGD 392
           FL + CKKA+  FFE++G+ISHQ++SYNDFI++GIQ VFDS+GEI V+PGYDPSKKG+GD
Sbjct: 67  FLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGD 126

Query: 393 WRYAAVKFGKVKLDPPTFFTGEKFSNDNAIDFVDFYPRH 509
           W++A+VKFGKV LD P F+ GEKFS  N  ++++ +PRH
Sbjct: 127 WKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRH 165


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  146 bits (368), Expect = 2e-33
 Identities = 64/99 (64%), Positives = 81/99 (81%)
 Frame = +3

Query: 213 FLNSVCKKAATSFFEQHGLISHQLNSYNDFIKHGIQNVFDSIGEITVQPGYDPSKKGDGD 392
           FL + CKKA+T FFE++G ISHQ+NSYNDFI +GIQ VFDS+GEI V+PGYDPSK+GDGD
Sbjct: 59  FLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 118

Query: 393 WRYAAVKFGKVKLDPPTFFTGEKFSNDNAIDFVDFYPRH 509
           W++A+VKFGKV L+ P F+ GEKFS     +++D  PRH
Sbjct: 119 WKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRH 157


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  130 bits (326), Expect = 1e-28
 Identities = 58/99 (58%), Positives = 76/99 (76%)
 Frame = +3

Query: 213 FLNSVCKKAATSFFEQHGLISHQLNSYNDFIKHGIQNVFDSIGEITVQPGYDPSKKGDGD 392
           +L + CKK A SFF ++GLI HQ+NS+NDFIK+GIQ VFDS GEI V+PGYDPSK+G+GD
Sbjct: 81  YLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGD 140

Query: 393 WRYAAVKFGKVKLDPPTFFTGEKFSNDNAIDFVDFYPRH 509
           WRYA+V+FGKV L+ P  + GE    ++    ++F PRH
Sbjct: 141 WRYASVRFGKVTLERPRVWAGESDGKES----LNFLPRH 175


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  130 bits (326), Expect = 1e-28
 Identities = 58/99 (58%), Positives = 76/99 (76%)
 Frame = +3

Query: 213 FLNSVCKKAATSFFEQHGLISHQLNSYNDFIKHGIQNVFDSIGEITVQPGYDPSKKGDGD 392
           +L + CKK A SFF ++GLI HQ+NS+NDFIK+GIQ VFDS GEI V+PGYDPSK+G+GD
Sbjct: 45  YLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGD 104

Query: 393 WRYAAVKFGKVKLDPPTFFTGEKFSNDNAIDFVDFYPRH 509
           WRYA+V+FGKV L+ P  + GE    ++    ++F PRH
Sbjct: 105 WRYASVRFGKVTLERPRVWAGESDGKES----LNFLPRH 139


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  128 bits (322), Expect = 4e-28
 Identities = 60/99 (60%), Positives = 71/99 (71%)
 Frame = +3

Query: 213 FLNSVCKKAATSFFEQHGLISHQLNSYNDFIKHGIQNVFDSIGEITVQPGYDPSKKGDGD 392
           FL   CKK++ +FF Q+GLISHQ+NSYNDFIK+GIQ  FD  G+I VQPGYDPSKKGDG+
Sbjct: 47  FLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGE 106

Query: 393 WRYAAVKFGKVKLDPPTFFTGEKFSNDNAIDFVDFYPRH 509
           WRYA VKFGKV LD P F+ G     +      +  PRH
Sbjct: 107 WRYATVKFGKVTLDKPKFWGGAASGKE-----YNMLPRH 140