BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037308
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_180912.2| RNA polymerase II C-terminal domain phosphatase...    60   2e-07
gb|AAB80671.1| unknown protein [Arabidopsis thaliana]                  60   2e-07
gb|AAM94371.1|AF486633_1 CTD phosphatase-like 3 [Arabidopsis tha...    60   2e-07
ref|XP_002881287.1| hypothetical protein ARALYDRAFT_482300 [Arab...    59   5e-07
ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal doma...    56   3e-06

>ref|NP_180912.2| RNA polymerase II C-terminal domain phosphatase-like 3 [Arabidopsis
           thaliana] gi|238055326|sp|Q8LL04.2|CPL3_ARATH RecName:
           Full=RNA polymerase II C-terminal domain
           phosphatase-like 3; Short=FCP-like 3; AltName:
           Full=Carboxyl-terminal phosphatase-like 3; Short=AtCPL3;
           Short=CTD phosphatase-like 3 gi|330253756|gb|AEC08850.1|
           RNA polymerase II C-terminal domain phosphatase-like 3
           [Arabidopsis thaliana]
          Length = 1241

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 282 EADVLKVNRLVGDDLESGDVNCENELEKQLNLISKDLQTLSLNYGDTLYAGVCARLQNLV 103
           E D   V  +  D +E   +  E +LEK++ LI   L++ SL    T + GVC+R+   +
Sbjct: 162 EKDTESVVLISADKVEDDRILKERDLEKKVKLIRGVLESTSLVEAQTGFEGVCSRILGAL 221

Query: 102 DSLRNVHLD-DSISQKDALIQKAFASVQTVKHVF 4
           +SLR +  D D   ++D L+Q +FAS+QT+ +VF
Sbjct: 222 ESLRELVSDNDDFPKRDTLVQLSFASLQTINYVF 255


>gb|AAB80671.1| unknown protein [Arabidopsis thaliana]
          Length = 1066

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 282 EADVLKVNRLVGDDLESGDVNCENELEKQLNLISKDLQTLSLNYGDTLYAGVCARLQNLV 103
           E D   V  +  D +E   +  E +LEK++ LI   L++ SL    T + GVC+R+   +
Sbjct: 139 EKDTESVVLISADKVEDDRILKERDLEKKVKLIRGVLESTSLVEAQTGFEGVCSRILGAL 198

Query: 102 DSLRNVHLD-DSISQKDALIQKAFASVQTVKHVF 4
           +SLR +  D D   ++D L+Q +FAS+QT+ +VF
Sbjct: 199 ESLRELVSDNDDFPKRDTLVQLSFASLQTINYVF 232


>gb|AAM94371.1|AF486633_1 CTD phosphatase-like 3 [Arabidopsis thaliana]
          Length = 1241

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 282 EADVLKVNRLVGDDLESGDVNCENELEKQLNLISKDLQTLSLNYGDTLYAGVCARLQNLV 103
           E D   V  +  D +E   +  E +LEK++ LI   L++ SL    T + GVC+R+   +
Sbjct: 162 EKDTESVVLISADKVEDDRILKERDLEKKVKLIRGVLESTSLVEAQTGFEGVCSRILGAL 221

Query: 102 DSLRNVHLD-DSISQKDALIQKAFASVQTVKHVF 4
           +SLR +  D D   ++D L+Q +FAS+QT+ +VF
Sbjct: 222 ESLRELVSDNDDFPKRDTLVQLSFASLQTINYVF 255


>ref|XP_002881287.1| hypothetical protein ARALYDRAFT_482300 [Arabidopsis lyrata subsp.
           lyrata] gi|297327126|gb|EFH57546.1| hypothetical protein
           ARALYDRAFT_482300 [Arabidopsis lyrata subsp. lyrata]
          Length = 1248

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -2

Query: 297 IDLDSEADVLKVNRLVGDDLESGDVNCENELEKQLNLISKDLQTLSLNYGDTLYAGVCAR 118
           +D ++E+ VL    +  D +E   +  E +LEK++ LI   L++ SL    T + GVC+R
Sbjct: 161 VDKETESVVL----ISADKVEDDRIQKEIDLEKKVKLIRGVLESTSLVEAQTGFEGVCSR 216

Query: 117 LQNLVDSLRNVHLD-DSISQKDALIQKAFASVQTVKHVF 4
           +   ++SLR +  D D   ++D L+Q +FAS+QT+  VF
Sbjct: 217 ILGALESLRELVSDNDDFPKRDTLVQLSFASLQTINSVF 255


>ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           3-like [Vitis vinifera]
          Length = 1238

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
 Frame = -2

Query: 435 NKNSSASADNV--VSQNDMGGKVVIQVEDDDDTXXXXXXXXXXXXXXEIDLDSEADVLKV 262
           +++ S+SA  V  V  +D G ++ ++++D  +                IDLDSE DV   
Sbjct: 111 SRDDSSSAKEVAKVIIDDSGDEMDVKMDDVSEKEEGELEEGE------IDLDSEPDVKDE 164

Query: 261 NRLVGDDLESGDVNC-ENELEKQLNLISKDLQTLSLNYGDTLYAGVCARLQNLVDSLRNV 85
             ++  D+   +++  E EL +++  I +DL+++++   +  ++GVC+RLQN + SL+ V
Sbjct: 165 GGVL--DVNEPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKV 222

Query: 84  H-----LDDSISQKDALIQKAFASVQTVKHVF 4
                  + S+  KDAL Q+   +++ + HVF
Sbjct: 223 FGEKVVGESSVPTKDALAQQLINAIRALNHVF 254