BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00037062
         (841 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   195   1e-47
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   195   1e-47
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   163   5e-38
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   154   2e-35
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      153   5e-35

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  195 bits (495), Expect = 1e-47
 Identities = 118/286 (41%), Positives = 165/286 (57%), Gaps = 7/286 (2%)
 Frame = -1

Query: 838 KVSFPYIVLGETEIMHNDHLRAHSCLSAA-HTLSNDYSETEHINIRKSSC--GDISCIIN 668
           + SFP +   + E ++ D  +  +C S A  T  NDYS  E + ++   C  GD+  I+N
Sbjct: 43  RFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVN 102

Query: 667 SNFRKPAEVDQFTSITSVQASKVSHFGVLMNNLNMLEKTFADSDVLRLENDILSQLDRLG 488
           ++ + P   D   S+  +QASK S F +L+ NL++LE+ FADS+++RLE DI+ QL RLG
Sbjct: 103 AS-QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLG 161

Query: 487 ALKLFHTCLSRTRSTPVN----SSVTEYIEEEHQMKNHVNDHMANIVVCSGXXXXXXXXX 320
           ALKLF  CLSRT  T  +    S+ TE+I E  Q    V+DH+  +VV SG         
Sbjct: 162 ALKLFQICLSRTLKTSTSFDLFSAPTEHIRE-CQTNGTVDDHLDKVVVRSGKKEERKSKR 220

Query: 319 XXASQLEKDVYLLPSPSRTKHAHHQNPNLXXXXXXXXXXXXXXKITRNEAELTVGVKLVA 140
             A +   ++Y  P PS+T       P++                 +NEAE++ GVKLVA
Sbjct: 221 ERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVA 280

Query: 139 DLEKIKTLLEKETGKTASLSSWAEAAQVDKKTLQQNLHFGCYCKDE 2
           +LE+I+  LE+E G  ASLS+WAEAA VDKK LQQ L FG YC+DE
Sbjct: 281 NLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDE 326


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  195 bits (495), Expect = 1e-47
 Identities = 118/286 (41%), Positives = 165/286 (57%), Gaps = 7/286 (2%)
 Frame = -1

Query: 838 KVSFPYIVLGETEIMHNDHLRAHSCLSAA-HTLSNDYSETEHINIRKSSC--GDISCIIN 668
           + SFP +   + E ++ D  +  +C S A  T  NDYS  E + ++   C  GD+  I+N
Sbjct: 93  RFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVN 152

Query: 667 SNFRKPAEVDQFTSITSVQASKVSHFGVLMNNLNMLEKTFADSDVLRLENDILSQLDRLG 488
           ++ + P   D   S+  +QASK S F +L+ NL++LE+ FADS+++RLE DI+ QL RLG
Sbjct: 153 AS-QAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLG 211

Query: 487 ALKLFHTCLSRTRSTPVN----SSVTEYIEEEHQMKNHVNDHMANIVVCSGXXXXXXXXX 320
           ALKLF  CLSRT  T  +    S+ TE+I E  Q    V+DH+  +VV SG         
Sbjct: 212 ALKLFQICLSRTLKTSTSFDLFSAPTEHIRE-CQTNGTVDDHLDKVVVRSGKKEERKSKR 270

Query: 319 XXASQLEKDVYLLPSPSRTKHAHHQNPNLXXXXXXXXXXXXXXKITRNEAELTVGVKLVA 140
             A +   ++Y  P PS+T       P++                 +NEAE++ GVKLVA
Sbjct: 271 ERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVA 330

Query: 139 DLEKIKTLLEKETGKTASLSSWAEAAQVDKKTLQQNLHFGCYCKDE 2
           +LE+I+  LE+E G  ASLS+WAEAA VDKK LQQ L FG YC+DE
Sbjct: 331 NLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDE 376


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  163 bits (412), Expect = 5e-38
 Identities = 102/284 (35%), Positives = 152/284 (53%), Gaps = 4/284 (1%)
 Frame = -1

Query: 841 AKVSFPYIVLGETEIMHNDHLRAHSCLSAAHTLSNDYSETEHINIRKSSCGDISCIINSN 662
           +++SF  ++  E +I H D L+ ++   A  T+ N++S+ E   +           I  +
Sbjct: 43  SRLSFLSVISEEGDIAHRDPLKTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGLNIIGD 102

Query: 661 FRKPAEVDQFTSITSVQASKVSHFGVLMNNLNMLEKTFADSDVLRLENDILSQLDRLGAL 482
                + D F S +S +  + S F +L+ NLN+LE++FADSD  +LE DIL QL +LGAL
Sbjct: 103 AEVSLKEDIFVSPSSTK-ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGAL 161

Query: 481 KLFHTCLSRTRSTP----VNSSVTEYIEEEHQMKNHVNDHMANIVVCSGXXXXXXXXXXX 314
           KLF+TCL+RT  T     V+   TE I E +     +N+ +  +V  +            
Sbjct: 162 KLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERA 221

Query: 313 ASQLEKDVYLLPSPSRTKHAHHQNPNLXXXXXXXXXXXXXXKITRNEAELTVGVKLVADL 134
           +++       LP PSR   +  + P +               I RNEAE+  G+K++ADL
Sbjct: 222 SARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADL 281

Query: 133 EKIKTLLEKETGKTASLSSWAEAAQVDKKTLQQNLHFGCYCKDE 2
           EKI+T LE+ET +  SLS WAEAA +D K LQQ L FG YC+DE
Sbjct: 282 EKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDE 325


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  154 bits (390), Expect = 2e-35
 Identities = 106/287 (36%), Positives = 157/287 (54%), Gaps = 8/287 (2%)
 Frame = -1

Query: 838 KVSFPYIVLGETEIMHNDHLRAHSCLSAA-HTLSNDYSETEHINIRKS--SCGDISCIIN 668
           ++SF   +  E E +  + L+ ++CLS A  T +ND    E I +     S G +   I 
Sbjct: 43  RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIK 102

Query: 667 SNFRKPAEV-DQFTSITSVQASKVSHFGVLMNNLNMLEKTFADSDVLRLENDILSQLDRL 491
           S   +P++V D F+S TS+   K S FG+LM NL++LE+TF +S +L LE DI+ QL +L
Sbjct: 103 ST--RPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKL 160

Query: 490 GALKLFHTCLSRT-RSTPVNSSVTEYIE--EEHQMKNHVNDHMANIVVCSG-XXXXXXXX 323
           GAL+ F+TCLSRT +++  + S    IE  E+H +    ND   N+ V S          
Sbjct: 161 GALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVK 220

Query: 322 XXXASQLEKDVYLLPSPSRTKHAHHQNPNLXXXXXXXXXXXXXXKITRNEAELTVGVKLV 143
                  +K    L +    K   H++  +               +  NEAE++ GVK+V
Sbjct: 221 KRAMDNADKIASRLLTTRAVKEKIHRS-TVFSRKKSSNSSKRRLIVAINEAEMSTGVKVV 279

Query: 142 ADLEKIKTLLEKETGKTASLSSWAEAAQVDKKTLQQNLHFGCYCKDE 2
           A+LE+I+  LEKE+G+ AS+S WAEAA VD K LQ+ L FG +C+DE
Sbjct: 280 ANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDE 326


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  153 bits (386), Expect = 5e-35
 Identities = 106/283 (37%), Positives = 145/283 (51%), Gaps = 3/283 (1%)
 Frame = -1

Query: 841 AKVSFPYIVLGETEIMHNDHLRAHSCLSAAH-TLSNDYSETEHINIRKSSCGDISCIINS 665
           A++S   I   E+E +  D LR H+  S+   T+ NDYS  E   I K SC D+     S
Sbjct: 43  ARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLE-TTISKRSCKDLI----S 97

Query: 664 NFRKPAEVDQFTSITSVQASKVSHFGVLMNNLNMLEKTFADSDVLRLENDILSQLDRLGA 485
           +    ++ D    + SVQ+   SHF  LM N+N+LE   +DS++L+LE DIL QL RLGA
Sbjct: 98  DTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGA 157

Query: 484 LKLFHTCLSRTRSTPVNSSVTEYIEEEHQMKNHVNDHMANIVVCSGXXXXXXXXXXXASQ 305
           L+LFH CLSR       S +   I E+ +     ++ +   +V S              Q
Sbjct: 158 LQLFHACLSRIIDM---SDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQ 214

Query: 304 --LEKDVYLLPSPSRTKHAHHQNPNLXXXXXXXXXXXXXXKITRNEAELTVGVKLVADLE 131
               K        S     HH    +               I +NEAE++ G+K+VA LE
Sbjct: 215 ASTSKRCACKSESSIESSIHHV---VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLE 271

Query: 130 KIKTLLEKETGKTASLSSWAEAAQVDKKTLQQNLHFGCYCKDE 2
           K+K  LEKETGK  SL+ WAEAA +D+K LQ +LHFG YC+DE
Sbjct: 272 KVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDE 314