BLASTX nr result
ID: Cnidium21_contig00036959
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00036959
(536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002891792.1| hypothetical protein ARALYDRAFT_892466 [Arab... 202 2e-50
gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana] 202 3e-50
ref|NP_564652.2| RELA/SPOT homolog 3 [Arabidopsis thaliana] gi|4... 202 3e-50
ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|2... 200 1e-49
ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|2... 195 4e-48
>ref|XP_002891792.1| hypothetical protein ARALYDRAFT_892466 [Arabidopsis lyrata subsp.
lyrata] gi|297337634|gb|EFH68051.1| hypothetical protein
ARALYDRAFT_892466 [Arabidopsis lyrata subsp. lyrata]
Length = 715
Score = 202 bits (515), Expect = 2e-50
Identities = 109/179 (60%), Positives = 129/179 (72%), Gaps = 3/179 (1%)
Frame = +1
Query: 7 SPVSIFHGPVXXXXXXXXXXXXKDGVDFNRSFRVGSPNGLFNRFVAHAVGSCLNYDSPSF 186
SPVS+ HGP+ D S RVGS LFN FV A+GSC++YD+ S
Sbjct: 115 SPVSVLHGPISSGNSPPMRISRDRNFDGGSSLRVGSSR-LFNGFVRKAIGSCVDYDTDSV 173
Query: 187 ELDD-LPFSMDDDNLGESN--YATDLLATAQLRHKIFTDHLVIRAFNQAEKAHRGQMRAS 357
+D+ LPF+MDD GE YA DLL AQL+HKIF D VI+AF +AEKAHRGQMRA+
Sbjct: 174 LVDEQLPFTMDDGFEGERKQPYARDLLRRAQLKHKIFEDESVIKAFYEAEKAHRGQMRAN 233
Query: 358 GDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTIDDSFMTYDHIFGSFGSRVADLVQGV 534
GDPYLQHCVETA+LLA IGANSTVV AG+LHDT+DDSFM+YD+I +FGS VADLV+GV
Sbjct: 234 GDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGV 292
>gb|AAF37283.1|AF225704_1 RSH3 [Arabidopsis thaliana]
Length = 712
Score = 202 bits (514), Expect = 3e-50
Identities = 108/179 (60%), Positives = 130/179 (72%), Gaps = 3/179 (1%)
Frame = +1
Query: 7 SPVSIFHGPVXXXXXXXXXXXXKDGVDFNRSFRVGSPNGLFNRFVAHAVGSCLNYDSPSF 186
SPVS+ HGP+ +D + RVGS LFN FV A+GSC++YD+ S
Sbjct: 115 SPVSVLHGPISSGNSPPMRISRDRNLDGGSALRVGSSR-LFNGFVRKAIGSCVDYDTDSV 173
Query: 187 ELDD-LPFSMDDDNLGESN--YATDLLATAQLRHKIFTDHLVIRAFNQAEKAHRGQMRAS 357
+D+ LPF+MDD GE YA DLL AQL+HKIF D VI+AF +AEKAHRGQMRA+
Sbjct: 174 LVDEQLPFTMDDGFEGERRQPYARDLLRRAQLKHKIFEDESVIKAFYEAEKAHRGQMRAT 233
Query: 358 GDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTIDDSFMTYDHIFGSFGSRVADLVQGV 534
GDPYLQHCVETA+LLA IGANSTVV AG+LHDT+DDSFM+YD+I +FGS VADLV+GV
Sbjct: 234 GDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGV 292
>ref|NP_564652.2| RELA/SPOT homolog 3 [Arabidopsis thaliana]
gi|4587556|gb|AAD25787.1|AC006577_23 Similar to
gi|1653162 (p)ppGpp 3-pyrophosphohydrolase from
Synechocystis sp genome gb|D90911. EST gb|W43807 comes
from this gene [Arabidopsis thaliana]
gi|110742595|dbj|BAE99211.1| RSH3 [Arabidopsis thaliana]
gi|332194932|gb|AEE33053.1| RELA/SPOT homolog 3
[Arabidopsis thaliana]
Length = 715
Score = 202 bits (514), Expect = 3e-50
Identities = 108/179 (60%), Positives = 130/179 (72%), Gaps = 3/179 (1%)
Frame = +1
Query: 7 SPVSIFHGPVXXXXXXXXXXXXKDGVDFNRSFRVGSPNGLFNRFVAHAVGSCLNYDSPSF 186
SPVS+ HGP+ +D + RVGS LFN FV A+GSC++YD+ S
Sbjct: 115 SPVSVLHGPISSGNSPPMRISRDRNLDGGSALRVGSSR-LFNGFVRKAIGSCVDYDTDSV 173
Query: 187 ELDD-LPFSMDDDNLGESN--YATDLLATAQLRHKIFTDHLVIRAFNQAEKAHRGQMRAS 357
+D+ LPF+MDD GE YA DLL AQL+HKIF D VI+AF +AEKAHRGQMRA+
Sbjct: 174 LVDEQLPFTMDDGFEGERRQPYARDLLRRAQLKHKIFEDESVIKAFYEAEKAHRGQMRAT 233
Query: 358 GDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTIDDSFMTYDHIFGSFGSRVADLVQGV 534
GDPYLQHCVETA+LLA IGANSTVV AG+LHDT+DDSFM+YD+I +FGS VADLV+GV
Sbjct: 234 GDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGV 292
>ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1|
predicted protein [Populus trichocarpa]
Length = 716
Score = 200 bits (509), Expect = 1e-49
Identities = 115/201 (57%), Positives = 137/201 (68%), Gaps = 23/201 (11%)
Frame = +1
Query: 1 DLSPVSIFHGPVXXXXXXXXXXXX-KDGVD------FNRSFRVGSPNGLFNRFVAHAVGS 159
D SPVS+ G V + G D + SFR G+ NGLFN FV +A+GS
Sbjct: 111 DQSPVSVLQGQVSCSSSPPTRIARERSGCDVGFQSSIHGSFRSGA-NGLFNGFVRNALGS 169
Query: 160 CLNYDSPSFEL--------------DDLPFSMDDD--NLGESNYATDLLATAQLRHKIFT 291
C++YDSPSFE+ D+L FSM+D + YA +LL AQ RH IF
Sbjct: 170 CVDYDSPSFEVHNNGIDEDSSSVVVDELTFSMEDSCVDANYEPYAKELLFGAQSRHTIFC 229
Query: 292 DHLVIRAFNQAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTIDDSF 471
D VI+AF++AEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDT+DDSF
Sbjct: 230 DDFVIKAFHEAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTLDDSF 289
Query: 472 MTYDHIFGSFGSRVADLVQGV 534
++YDHIF +FG+ VADLV+GV
Sbjct: 290 ISYDHIFKTFGAGVADLVEGV 310
>ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1|
predicted protein [Populus trichocarpa]
Length = 737
Score = 195 bits (495), Expect = 4e-48
Identities = 111/201 (55%), Positives = 136/201 (67%), Gaps = 23/201 (11%)
Frame = +1
Query: 1 DLSPVSIFHGPVXXXXXXXXXXXX-KDGVDFNRSFRVGSP-----NGLFNRFVAHAVGSC 162
D SPVS+ HG V + G D + P NGLFN FV +A+GSC
Sbjct: 113 DQSPVSVLHGQVSCSSSPPMKTTRERSGCDVGFQSSIHGPYRGGANGLFNGFVRNALGSC 172
Query: 163 LNYDSPSFEL--------------DDLPFSMDDDNLGESNY---ATDLLATAQLRHKIFT 291
++YDSPSFE+ D+L F+M+D + E+NY A LL AQ RHKIF
Sbjct: 173 VDYDSPSFEVRRDGVDYGSSSVAVDELTFAMEDSFV-EANYEPYAKKLLLGAQSRHKIFC 231
Query: 292 DHLVIRAFNQAEKAHRGQMRASGDPYLQHCVETAVLLAIIGANSTVVAAGLLHDTIDDSF 471
D VI+AF +AEKAHRGQMRASGDPYL+HCVETAVLLAIIGANS+VVAAGLLHD++DDSF
Sbjct: 232 DDFVIKAFYEAEKAHRGQMRASGDPYLEHCVETAVLLAIIGANSSVVAAGLLHDSLDDSF 291
Query: 472 MTYDHIFGSFGSRVADLVQGV 534
++YD+IF +FG+ VADLV+GV
Sbjct: 292 LSYDYIFKTFGAGVADLVEGV 312