BLASTX nr result

ID: Cnidium21_contig00036815 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00036815
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273025.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP...    78   9e-13
emb|CBI15349.3| unnamed protein product [Vitis vinifera]               78   9e-13
ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putativ...    63   2e-08
ref|NP_196428.2| UBQ, helicase-c and DEAD-like helicase domain-c...    59   5e-07
emb|CAB93712.1| putative protein [Arabidopsis thaliana]                59   5e-07

>ref|XP_002273025.2| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent helicase
           HRQ1-like [Vitis vinifera]
          Length = 1231

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/90 (44%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   RRMPLLKKVNAMKKRDDSFKTKLWSTIESFLRETGNDMAKCFSLEDILMFVKAKSTASNI 180
           +++P+ K V+ MKK +  FKT LW  ++  +R+ GN+MA  FSLED+L+ VK        
Sbjct: 347 KQVPISKIVSVMKKLESCFKTHLWRAVKVLMRKNGNEMAMLFSLEDLLISVKEGGAG--- 403

Query: 181 KAKRPRNCTSAPSTSVSFKEVCHDTQPLLP 270
           KAK+ R   SA S++ S +  CHDT PLLP
Sbjct: 404 KAKQARRSWSAVSSTNSAQSKCHDTNPLLP 433


>emb|CBI15349.3| unnamed protein product [Vitis vinifera]
          Length = 1188

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/90 (44%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   RRMPLLKKVNAMKKRDDSFKTKLWSTIESFLRETGNDMAKCFSLEDILMFVKAKSTASNI 180
           +++P+ K V+ MKK +  FKT LW  ++  +R+ GN+MA  FSLED+L+ VK        
Sbjct: 287 KQVPISKIVSVMKKLESCFKTHLWRAVKVLMRKNGNEMAMLFSLEDLLISVKEGGAG--- 343

Query: 181 KAKRPRNCTSAPSTSVSFKEVCHDTQPLLP 270
           KAK+ R   SA S++ S +  CHDT PLLP
Sbjct: 344 KAKQARRSWSAVSSTNSAQSKCHDTNPLLP 373


>ref|XP_002514608.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223546212|gb|EEF47714.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 1189

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +1

Query: 1   RRMPLLKKVNAMKKRDDSFKTKLWSTIESFLRETGNDMAKCFSLEDILMFVKAKSTA-SN 177
           + M L K    M+KR+ SFK+ LW      + ++GN +A  FSLED+L FVK    +   
Sbjct: 304 KAMSLSKIFTTMRKRESSFKSHLWEAARLLMSKSGNAIAMLFSLEDLLNFVKGGGVSEKG 363

Query: 178 IKAKRPRNCTSAPSTSVSFKEVCHDTQPLLP 270
            +AKR     S+ S   SF+  CH+T  L+P
Sbjct: 364 NEAKRESGRLSSISRPYSFRTHCHETNHLVP 394


>ref|NP_196428.2| UBQ, helicase-c and DEAD-like helicase domain-containing protein
           [Arabidopsis thaliana] gi|332003865|gb|AED91248.1| UBQ,
           helicase-c and DEAD-like helicase domain-containing
           protein [Arabidopsis thaliana]
          Length = 1141

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/90 (34%), Positives = 46/90 (51%)
 Frame = +1

Query: 1   RRMPLLKKVNAMKKRDDSFKTKLWSTIESFLRETGNDMAKCFSLEDILMFVKAKSTASNI 180
           +++PL K  +AMKKR+ SFK+  W +I S L +   +     SLE +L F          
Sbjct: 252 KKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEGRADGGN 311

Query: 181 KAKRPRNCTSAPSTSVSFKEVCHDTQPLLP 270
           +A++    T   S S  F+ +CH T  LLP
Sbjct: 312 EARQAGKGTCPTSGSRKFQTLCHATNSLLP 341


>emb|CAB93712.1| putative protein [Arabidopsis thaliana]
          Length = 1058

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/90 (34%), Positives = 46/90 (51%)
 Frame = +1

Query: 1   RRMPLLKKVNAMKKRDDSFKTKLWSTIESFLRETGNDMAKCFSLEDILMFVKAKSTASNI 180
           +++PL K  +AMKKR+ SFK+  W +I S L +   +     SLE +L F          
Sbjct: 252 KKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLKFASEGRADGGN 311

Query: 181 KAKRPRNCTSAPSTSVSFKEVCHDTQPLLP 270
           +A++    T   S S  F+ +CH T  LLP
Sbjct: 312 EARQAGKGTCPTSGSRKFQTLCHATNSLLP 341


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