BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00036655
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       126   2e-27
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   124   6e-27
gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]          118   6e-25
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   117   1e-24
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   112   2e-23

>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  126 bits (317), Expect = 2e-27
 Identities = 73/148 (49%), Positives = 93/148 (62%), Gaps = 13/148 (8%)
 Frame = -1

Query: 406 PNPGPSRRARFAPKNSKFKPKPKTEQSISDSIP--------PVKQESNSDSIGIVKAEIE 251
           P+  P+R +RFAPK SKFKP+ +   + S+SI         PV   ++S +    KAE  
Sbjct: 9   PSQAPTRPSRFAPKGSKFKPRTEPVAATSNSIAKKEELDSKPVSPINSSTTAAAGKAEDA 68

Query: 250 -----DVSVKIDTDMKLETEDPIVKDLISQDLMEVDNADGEDDVVREIDVYFTPSVDVNT 86
                  SV +D D K+E E    KD    + ME    +GED++VREIDVY TPS+D NT
Sbjct: 69  ASASVSQSVAMDVDAKVEEEAEQPKD----EPME-SREEGEDEIVREIDVYLTPSIDPNT 123

Query: 85  QLYVMQYPLKPCWRPYELDDRCEEVRVK 2
           +LYV+QYPL+P WRPYELDDRCEEVRVK
Sbjct: 124 KLYVLQYPLRPLWRPYELDDRCEEVRVK 151


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score =  124 bits (312), Expect = 6e-27
 Identities = 69/139 (49%), Positives = 89/139 (64%), Gaps = 12/139 (8%)
 Frame = -1

Query: 382 ARFAPKNSK----FKPKPKTEQSISDSIPPVKQESNSDSIGIVKAEIEDVSVKIDTD--- 224
           +RFAP + K     KPKPK E   S  + P    S S++    K +I+D   K +T    
Sbjct: 17  SRFAPTSKKPQPKSKPKPKPEPQESVPVAPKPDPSVSNTAEDAKPKIDDTLSKTETGVSN 76

Query: 223 ----MKLETEDPIVKDLISQDLMEVDNADGEDDVV-REIDVYFTPSVDVNTQLYVMQYPL 59
               M+++ ++     +   DLM+VD  + EDDVV REIDVY+TPSVD NTQLYVMQYPL
Sbjct: 77  GNVKMEIDAKEERGAAVKENDLMDVDKEEDEDDVVVREIDVYYTPSVDPNTQLYVMQYPL 136

Query: 58  KPCWRPYELDDRCEEVRVK 2
           +PCWRPYELD+RC+EVRVK
Sbjct: 137 RPCWRPYELDERCKEVRVK 155


>gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 666

 Score =  118 bits (295), Expect = 6e-25
 Identities = 66/138 (47%), Positives = 91/138 (65%), Gaps = 5/138 (3%)
 Frame = -1

Query: 400 PGPSRRARFAPKNSKFKPKPKTE-----QSISDSIPPVKQESNSDSIGIVKAEIEDVSVK 236
           P  SR ARFAPKNSK KP+PK E     + ++D   P K+E   DS  ++  E    +  
Sbjct: 12  PPSSRAARFAPKNSKLKPQPKPEPEPEPEPLTDPTIPSKKEE-IDSKPLLTLENGSSAPS 70

Query: 235 IDTDMKLETEDPIVKDLISQDLMEVDNADGEDDVVREIDVYFTPSVDVNTQLYVMQYPLK 56
           IDT    E  D  V+  ++ +++E     GED+VVREID+YFTPS+D NTQLYV+Q P++
Sbjct: 71  IDT----EKADVEVQQDVAMEIVE----SGEDEVVREIDMYFTPSLDPNTQLYVLQSPMR 122

Query: 55  PCWRPYELDDRCEEVRVK 2
           P WRPYEL++RC+EVR++
Sbjct: 123 PVWRPYELEERCKEVRLR 140


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 677

 Score =  117 bits (292), Expect = 1e-24
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 19/154 (12%)
 Frame = -1

Query: 406 PNPGPSRRARFAPKNSKFKPKPKTEQSISDS--IP------------PVKQESNSDSIGI 269
           P+  PSR +++APK++KFKP+PKT+ +      +P            P+ +++  D    
Sbjct: 10  PSQVPSRPSKYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSKKNEDDEEEE 69

Query: 268 VKAEI-----EDVSVKIDTDMKLETEDPIVKDLISQDLMEVDNADGEDDVVREIDVYFTP 104
           +K +I      +  +  +  +K+E +D + +D   ++  E +  + ED +VREIDV+FTP
Sbjct: 70  IKPKIISTPKNEAWLSNNGAVKMEIDDSMDED--KREEGENEEEEEEDMIVREIDVFFTP 127

Query: 103 SVDVNTQLYVMQYPLKPCWRPYELDDRCEEVRVK 2
           S+D  TQLYVMQYPL+PCWRPYELD+RCEEVRVK
Sbjct: 128 SIDSATQLYVMQYPLRPCWRPYELDERCEEVRVK 161


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
           gi|358344405|ref|XP_003636280.1| DNA-directed RNA
           polymerase III subunit RPC5 [Medicago truncatula]
           gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
           gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  112 bits (281), Expect = 2e-23
 Identities = 67/145 (46%), Positives = 91/145 (62%), Gaps = 12/145 (8%)
 Frame = -1

Query: 400 PGPSRRARFAPKNSKFKPKPKTEQSISDSIPPVKQESNSDSIGI-------VKAEIEDVS 242
           P   R +RFAPK+SKFKPK +    +  S PP    + ++   I       VK E  + S
Sbjct: 9   PVKPRVSRFAPKSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHE-PNAS 67

Query: 241 VKIDTDMKLETE-DPIVKDLISQDLM----EVDNADGEDDVVREIDVYFTPSVDVNTQLY 77
           VK D + K+E + D    D+   + +    EV+  D ED VVREIDVYF+PS+D +T+LY
Sbjct: 68  VKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEEDTVVREIDVYFSPSIDNDTKLY 127

Query: 76  VMQYPLKPCWRPYELDDRCEEVRVK 2
           VMQYPL+P WRPY+LD++CEEVR+K
Sbjct: 128 VMQYPLRPSWRPYDLDEQCEEVRLK 152