BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00036577
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   100   9e-20
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...    95   5e-18
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    94   1e-17
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...    93   2e-17
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    86   4e-15

>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  100 bits (250), Expect = 9e-20
 Identities = 55/111 (49%), Positives = 69/111 (62%)
 Frame = +1

Query: 145 HSTKTQDKWLTLPPYTHNNTIDGSALGKEIYTNNSPEDKAETTAFKWIIKCYPQLPRSLV 324
           ++TK   K+ TLPPYT  +TI GSALGK +    + +   ETTA KW+++C P+LPR+LV
Sbjct: 120 NNTKNTGKFFTLPPYT--STISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLV 177

Query: 325 QKLFRLRQXXXXXXXXXXXXXGGLAQERRVKRVGAKDAMQYGDRIFLPNTV 477
           QKLFRLRQ             G    E + KRV AKD M  GDRIFLP +V
Sbjct: 178 QKLFRLRQ-----VKRELLNVGDGEMEHKTKRVAAKDLMNVGDRIFLPISV 223


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudourine synthase 4, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 4; AltName: Full=RNA-uridine
           isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 51/116 (43%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
 Frame = +1

Query: 142 THSTKTQDKWLTLPPYTHNNTIDGSALGKEIYTNN----SPEDKAETTAFKWIIKCYPQL 309
           T +  ++ KWLTLPP++   TIDG+A+GK++ ++     S  D ++TTA +WI++C P L
Sbjct: 46  TQTDDSRGKWLTLPPFSP--TIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDL 103

Query: 310 PRSLVQKLFRLRQXXXXXXXXXXXXXGGLAQERRVKRVGAKDAMQYGDRIFLPNTV 477
           PR+LVQKLFRLRQ             G   Q  ++KRV AK+++  GDRI+LP +V
Sbjct: 104 PRTLVQKLFRLRQ---VRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSV 156


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
 Frame = +1

Query: 145 HSTKTQDKWLTLPPYTHNNTIDGSALGK-------EIYTNNSPEDKAETTAFKWIIKCYP 303
           H +K + KW TLP +T    +D S+LGK       ++ T N+    A TTA KW+++C P
Sbjct: 49  HKSK-KGKWFTLPAFTP--VVDASSLGKVLSGHRTDLNTGNTTAG-ASTTALKWVVRCCP 104

Query: 304 QLPRSLVQKLFRLRQXXXXXXXXXXXXXGGLAQERRVKRVGAKDAMQYGDRIFLPNTV 477
           QLPRSLVQKLFRLRQ             G   QE R+KRV AKD M  GD+I LP TV
Sbjct: 105 QLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITV 162


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 8/124 (6%)
 Frame = +1

Query: 130 HFLRTHSTKTQD----KWLTLPPYTHNNTIDGSALGKEIYTNN----SPEDKAETTAFKW 285
           H  R++ST   D     WLTLPP++   TIDG+A+GK++ ++     +  D ++TTA +W
Sbjct: 38  HCSRSYSTAQTDDSRGNWLTLPPFSP--TIDGTAVGKDLLSDGDSVKASTDNSKTTALRW 95

Query: 286 IIKCYPQLPRSLVQKLFRLRQXXXXXXXXXXXXXGGLAQERRVKRVGAKDAMQYGDRIFL 465
           I++C P LPR+LVQKLFRLRQ             G   Q  ++KRV AK+++  GDRI+L
Sbjct: 96  ILRCRPDLPRTLVQKLFRLRQ---VRRQMSLSVDGHELQRSQLKRVAAKESLNVGDRIYL 152

Query: 466 PNTV 477
           P +V
Sbjct: 153 PLSV 156


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 49/112 (43%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = +1

Query: 154 KTQDKWLTLPPYTHNNTIDGSALGKEIYTNNSPED----KAETTAFKWIIKCYPQLPRSL 321
           K  ++W TLPPYT   T++GS LG  I       +     A  TA KW+I+C P+LPRSL
Sbjct: 55  KGSNRWFTLPPYTA--TVNGSILGNRIMNGGGQAELGASTAAITALKWVIRCCPELPRSL 112

Query: 322 VQKLFRLRQXXXXXXXXXXXXXGGLAQERRVKRVGAKDAMQYGDRIFLPNTV 477
           VQKLFRLR+               L    ++KRV AKD +  GD+IFLP +V
Sbjct: 113 VQKLFRLRKVRRGSSMIENSEY-NLEARDQLKRVAAKDILNVGDQIFLPMSV 163