BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00036323
         (770 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...   357   1e-96
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   248   1e-63
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       246   4e-63
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         244   1e-62
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   244   1e-62

>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score =  357 bits (917), Expect = 1e-96
 Identities = 183/255 (71%), Positives = 198/255 (77%)
 Frame = +3

Query: 3   DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
           DRFSKMTHFIACKKTADASNIAKLFF+EVV LHGVPKSITSDRDTKFLSHFW TLWRMFG
Sbjct: 22  DRFSKMTHFIACKKTADASNIAKLFFKEVVRLHGVPKSITSDRDTKFLSHFWSTLWRMFG 81

Query: 183 TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
           T LNRS+T H Q DGQTEVTNRTLGNM+RS+CG+ PKQWDLALPQ+EFAYN+ V      
Sbjct: 82  TALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDNPKQWDLALPQIEFAYNSVV------ 135

Query: 363 SPFSLVYTSVPKHVVDLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXXXX 542
                       HVVDLV+LPKA G S   E MA+E++ VKE VKAKLEATG        
Sbjct: 136 ------------HVVDLVKLPKALGAS--AETMAEEILVVKEVVKAKLEATGKKNKVAAD 181

Query: 543 XXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSINI 722
                    EGD+VMV LRK RF VGTYNK KPRKYGPFKV+RKINDNAYVVALP S+NI
Sbjct: 182 KRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRKYGPFKVLRKINDNAYVVALPKSMNI 241

Query: 723 SNTFNVADIYEYHGD 767
           SNTFNVADI+EYH D
Sbjct: 242 SNTFNVADIHEYHAD 256


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  248 bits (633), Expect = 1e-63
 Identities = 126/255 (49%), Positives = 160/255 (62%)
 Frame = +3

Query: 3    DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
            DRFSKM HFI C KT DAS+IA LFFRE+V LHGVP +I SDRDTKFLSHFW TLW   G
Sbjct: 1290 DRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLG 1349

Query: 183  TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
            T L  S T HPQTDGQTEV NRTL  M+R+V  +  K W+  LP +EFAYN ++HS T  
Sbjct: 1350 TKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKM 1409

Query: 363  SPFSLVYTSVPKHVVDLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXXXX 542
             PF +VY  +P+  +DL+ LP +  ++   ++ A+ ++ + E+ K  +E           
Sbjct: 1410 CPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGD 1469

Query: 543  XXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSINI 722
                      GD V + LRKERFP    +K  PR  GPFKV+ KIN+NAY + LP    +
Sbjct: 1470 KGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGV 1529

Query: 723  SNTFNVADIYEYHGD 767
            S TFNVAD+  Y G+
Sbjct: 1530 SPTFNVADLKPYLGE 1544



 Score =  126 bits (317), Expect = 4e-27
 Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 3/252 (1%)
 Frame = +3

Query: 3    DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
            DR +K+  FI  K T   + +A+L+F  +V LHGVPK I SDR+++F SHFW  L    G
Sbjct: 2112 DRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELG 2171

Query: 183  TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
            T LN S   HPQTDGQTE  N+ L +M+ +   +  K WD +LP  EF+YNN+  ++   
Sbjct: 2172 TRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQM 2231

Query: 363  SPFSLVYTSVPKHVV--DLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXX 536
            +P+  +Y    +  +  D V   +  G  +  E  A +V  + +++K             
Sbjct: 2232 APYEALYGRKCRTPLLWDQVGESQVFGTDILREAEA-KVRTIWDNLKVAQSRQKSYADNR 2290

Query: 537  XXXXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSI 716
                           V       RF   T  K  PR  GPF++I +  + AY + LP S+
Sbjct: 2291 RRNLEFAVDDFVYLRVTPLRGVHRFQ--TKGKLAPRFVGPFRIIARRGEVAYQLELPASL 2348

Query: 717  -NISNTFNVADI 749
             N+ + F+V+ +
Sbjct: 2349 GNVHDVFHVSQL 2360


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  246 bits (628), Expect = 4e-63
 Identities = 125/255 (49%), Positives = 160/255 (62%)
 Frame = +3

Query: 3    DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
            DRFSKM HFI C K+ DA+++A LFFRE+V LHGVP +I SDRDTKFLSHFW TLW   G
Sbjct: 1318 DRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLG 1377

Query: 183  TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
            T L  S T HPQTDGQTEV NRTL  M+R+V  +  K W+  LP VEFAYN + HS T K
Sbjct: 1378 TKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKK 1437

Query: 363  SPFSLVYTSVPKHVVDLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXXXX 542
             PF +VY  +P+  +DL+ LP +  V+   +  A+ ++ + E+ K  +E           
Sbjct: 1438 CPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGS 1497

Query: 543  XXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSINI 722
                      GD V + LRK+RFP    +K  PR  GPFKV++KINDNAY + LP    +
Sbjct: 1498 KGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGV 1557

Query: 723  SNTFNVADIYEYHGD 767
            S TFN+AD+  Y G+
Sbjct: 1558 SPTFNIADLKPYLGE 1572


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  244 bits (624), Expect = 1e-62
 Identities = 124/255 (48%), Positives = 158/255 (61%)
 Frame = +3

Query: 3    DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
            DRFSKM HFI C KT DA++IA LFFRE+V LHGVP +I SDRD KFLSHFW TLW   G
Sbjct: 1293 DRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLG 1352

Query: 183  TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
            T L  S T HPQTDGQTEV NRTL  M+R+V  +  K W+  LP +EFAYN ++HS T  
Sbjct: 1353 TKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKM 1412

Query: 363  SPFSLVYTSVPKHVVDLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXXXX 542
             PF +VY  +P+  +DL+ LP +  ++    + A+ ++ + E+ K  +E           
Sbjct: 1413 CPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASD 1472

Query: 543  XXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSINI 722
                      GD V + LRKERFP    +K  PR  GPFKV+ KINDNAY + LP    +
Sbjct: 1473 KGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGV 1532

Query: 723  SNTFNVADIYEYHGD 767
            S TFN+AD+  Y G+
Sbjct: 1533 SPTFNIADLKPYLGE 1547


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  244 bits (623), Expect = 1e-62
 Identities = 124/255 (48%), Positives = 159/255 (62%)
 Frame = +3

Query: 3    DRFSKMTHFIACKKTADASNIAKLFFREVVCLHGVPKSITSDRDTKFLSHFWITLWRMFG 182
            DRFSKM HFI C K+ DA+++A LFFRE+V LHGVP +I SDRDTKFLSHFW TLW   G
Sbjct: 1318 DRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLG 1377

Query: 183  TNLNRSATAHPQTDGQTEVTNRTLGNMIRSVCGEKPKQWDLALPQVEFAYNNAVHSATGK 362
            T L  S T HPQTDGQTEV NRTL  M+R+V  +  K W+  LP VEFAYN + HS T K
Sbjct: 1378 TKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKK 1437

Query: 363  SPFSLVYTSVPKHVVDLVRLPKAPGVSVAVEKMAQEVIYVKESVKAKLEATGXXXXXXXX 542
             PF +VY  +P+  +DL+ LP +  V+   +  A+ ++ + E+ K  +E           
Sbjct: 1438 CPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGS 1497

Query: 543  XXXXXXXXXEGDEVMVFLRKERFPVGTYNKFKPRKYGPFKVIRKINDNAYVVALPDSINI 722
                      GD V + LRK+RFP    +K  PR  GPFKV++KINDN Y + LP    +
Sbjct: 1498 KGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNTYKLELPADFGV 1557

Query: 723  SNTFNVADIYEYHGD 767
            S TFN+AD+  Y G+
Sbjct: 1558 SPTFNIADLKPYLGE 1572