BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00036283
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containi...    62   2e-09
ref|XP_003624391.1| Pentatricopeptide repeat-containing protein ...    61   8e-08
ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containi...    47   6e-06

>ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +2

Query: 2   GDIDTATRAAQHALNLDRHTPSTYVLLSNTFADTSNWDAVGTLRKLM 142
           GDI+T  RAA+HALNLDR+ PSTY+LLSN FA   NWD+VG LR+LM
Sbjct: 701 GDIETGKRAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELM 747


>ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +2

Query: 2   GDIDTATRAAQHALNLDRHTPSTYVLLSNTFADTSNWDAVGTLRKLM 142
           GDI+T  RAA+HALNLDR+ PSTY+LLSN FA   NWD+VG LR+LM
Sbjct: 701 GDIETGKRAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELM 747


>ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera] gi|296087996|emb|CBI35279.3| unnamed
           protein product [Vitis vinifera]
          Length = 598

 Score = 61.6 bits (148), Expect(2) = 2e-09
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +2

Query: 2   GDIDTATRAAQHALNLDRHTPSTYVLLSNTFADTSNWDAVGTLRKLM 142
           GD++T   AA+ AL+LD+H  STYV+LSN FAD  NW  VG+LR+LM
Sbjct: 533 GDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELM 579



 Score = 25.0 bits (53), Expect(2) = 2e-09
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 147 SRDVKKRSGSSWI 185
           +RDVKK  GSSWI
Sbjct: 581 TRDVKKMPGSSWI 593


>ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499406|gb|AES80609.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 709

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/47 (57%), Positives = 37/47 (78%)
 Frame = +2

Query: 2   GDIDTATRAAQHALNLDRHTPSTYVLLSNTFADTSNWDAVGTLRKLM 142
           GD++T   AA+HA+  D++ PS+YVLLSN  A+TSNWD V +LR+LM
Sbjct: 491 GDVETGKLAAEHAIKHDKNDPSSYVLLSNMLAETSNWDCVVSLRELM 537


>ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score = 46.6 bits (109), Expect(2) = 6e-06
 Identities = 23/54 (42%), Positives = 29/54 (53%)
 Frame = +2

Query: 11  DTATRAAQHALNLDRHTPSTYVLLSNTFADTSNWDAVGTLRKLMGKSGC*EEVG 172
           D   R A+  L +D H   TY LLSN +A    WD V T+RKLM +    +E G
Sbjct: 508 DLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPG 561



 Score = 28.1 bits (61), Expect(2) = 6e-06
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 150 RDVKKRSGSSWIS*MDIKKNATAWVKSRGSNIP*SINLHE 269
           R++KK  G+SW   +DI+ +   ++ S GSN P SI +++
Sbjct: 554 RNIKKEPGASW---LDIRNDIHVFL-SEGSNHPESIQIYK 589