BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00035574
         (495 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   112   2e-35
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   101   1e-34
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   103   2e-34
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   106   9e-34
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   103   9e-34

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  112 bits (280), Expect(2) = 2e-35
 Identities = 51/107 (47%), Positives = 75/107 (70%)
 Frame = +1

Query: 1   IISFFETSTMHRGINSTSIALIPKVQNLTAMGDFRPISLCSIAYKCIAKIIANRIKNVLP 180
           I  FF  S MHR IN   + L+PKVQ+ T + +FRPI+ C++ YK I+K++ NR+K ++ 
Sbjct: 481 IQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIG 540

Query: 181 NAIDIAQSTFIKGRSISDNILMAQELFRGYSRETGVPKCALKIDLHK 321
             ++ AQS FI GR I+DNIL+A EL RGY+R+   P+C +K+D+ K
Sbjct: 541 EVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRK 587



 Score = 61.6 bits (148), Expect(2) = 2e-35
 Identities = 26/58 (44%), Positives = 37/58 (63%)
 Frame = +3

Query: 321 AFDSLSWDFVMAALEKMHFPSKFMSWVFACILTPMYSVKINGTISGYFKGAKGLRQGD 494
           A+DS+ W F+   L +  FPS+F+ W+  C+ T  YSV +NG  +  F+  KGLRQGD
Sbjct: 588 AYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGD 645


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  101 bits (251), Expect(2) = 1e-34
 Identities = 48/107 (44%), Positives = 73/107 (68%)
 Frame = +1

Query: 1   IISFFETSTMHRGINSTSIALIPKVQNLTAMGDFRPISLCSIAYKCIAKIIANRIKNVLP 180
           I SFF    + +G+NST +ALIPK +    + D+RPIS C++ YK I+KI+ANR+K +LP
Sbjct: 217 IQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILP 276

Query: 181 NAIDIAQSTFIKGRSISDNILMAQELFRGYSRETGVPKCALKIDLHK 321
             I   QS F+K R + +N+L+A EL + Y +++   +CA+KID+ K
Sbjct: 277 KFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISK 323



 Score = 70.1 bits (170), Expect(2) = 1e-34
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +3

Query: 321 AFDSLSWDFVMAALEKMHFPSKFMSWVFACILTPMYSVKINGTISGYFKGAKGLRQG 491
           AFDSL W F+   L  M+FP +F+ W+  C+ T  +S+++NG ++GYF+ A+GLRQG
Sbjct: 324 AFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQG 380


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  103 bits (258), Expect(2) = 2e-34
 Identities = 50/107 (46%), Positives = 74/107 (69%)
 Frame = +1

Query: 1    IISFFETSTMHRGINSTSIALIPKVQNLTAMGDFRPISLCSIAYKCIAKIIANRIKNVLP 180
            I SFF    + +G+N+T +ALIPK      M D+RPIS C++ YK I+KI+ANR+K +LP
Sbjct: 793  IQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLP 852

Query: 181  NAIDIAQSTFIKGRSISDNILMAQELFRGYSRETGVPKCALKIDLHK 321
            + I   QS F+K R + +N+L+A EL + Y +E+  P+CA+KID+ K
Sbjct: 853  SFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISK 899



 Score = 66.6 bits (161), Expect(2) = 2e-34
 Identities = 26/57 (45%), Positives = 40/57 (70%)
 Frame = +3

Query: 321  AFDSLSWDFVMAALEKMHFPSKFMSWVFACILTPMYSVKINGTISGYFKGAKGLRQG 491
            AFDS+ W F++  LE ++FP  F  W+  CI T  +SV++NG ++G+F  ++GLRQG
Sbjct: 900  AFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQG 956


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  106 bits (265), Expect(2) = 9e-34
 Identities = 49/107 (45%), Positives = 69/107 (64%)
 Frame = +1

Query: 1   IISFFETSTMHRGINSTSIALIPKVQNLTAMGDFRPISLCSIAYKCIAKIIANRIKNVLP 180
           I+ FFE   MH+ IN T++ LIPK+       D+RPI+ CS  YK I+KI+  R++ V+ 
Sbjct: 484 ILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVIT 543

Query: 181 NAIDIAQSTFIKGRSISDNILMAQELFRGYSRETGVPKCALKIDLHK 321
             +D AQ+ FI  R I DNIL+A EL RGY+R    P+C +K+D+ K
Sbjct: 544 EVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRK 590



 Score = 62.0 bits (149), Expect(2) = 9e-34
 Identities = 27/58 (46%), Positives = 39/58 (67%)
 Frame = +3

Query: 321 AFDSLSWDFVMAALEKMHFPSKFMSWVFACILTPMYSVKINGTISGYFKGAKGLRQGD 494
           A+DS+ W F+ + L+++ FPS F+ W+ AC+ T  YS+ +NG  S  F   KGLRQGD
Sbjct: 591 AYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGD 648


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  103 bits (256), Expect(2) = 9e-34
 Identities = 52/107 (48%), Positives = 73/107 (68%)
 Frame = +1

Query: 1   IISFFETSTMHRGINSTSIALIPKVQNLTAMGDFRPISLCSIAYKCIAKIIANRIKNVLP 180
           I SFF    + +GINST +ALIPK +    M D+RPIS C++ YK I+KIIANR+K VLP
Sbjct: 384 IQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLP 443

Query: 181 NAIDIAQSTFIKGRSISDNILMAQELFRGYSRETGVPKCALKIDLHK 321
             I   QS F+K R + +N+L+A E+ + Y +++   +CALKID+ K
Sbjct: 444 KFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISK 490



 Score = 65.5 bits (158), Expect(2) = 9e-34
 Identities = 27/57 (47%), Positives = 39/57 (68%)
 Frame = +3

Query: 321 AFDSLSWDFVMAALEKMHFPSKFMSWVFACILTPMYSVKINGTISGYFKGAKGLRQG 491
           AFDS+ W F++  LE M+FP +F  W+  CI T  +SV++NG ++G F  A+ LRQG
Sbjct: 491 AFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQG 547