BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00035286
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004935350.1| ATPase subunit 4 (mitochondrion) [Silene vul...    54   3e-14
ref|YP_004842186.1| hypothetical protein BemaM_p142 [Beta macroc...    54   4e-14
ref|YP_003587358.1| ATPase subunit 4 [Cucurbita pepo] gi|2591568...    51   3e-13
gb|AAW30209.1| ATPase subunit 4 [Amborella trichopoda]                 64   1e-08
dbj|BAJ22086.1| ATPase subunit 4 [Cycas taitungensis]                  42   1e-07

>ref|YP_004935350.1| ATPase subunit 4 (mitochondrion) [Silene vulgaris]
           gi|344227996|gb|AEM46181.1| ATPase subunit 4
           (mitochondrion) [Silene vulgaris]
           gi|385198360|gb|AFI44256.1| ATPase subunit 4
           (mitochondrion) [Silene vulgaris]
           gi|385198421|gb|AFI44309.1| ATPase subunit 4
           (mitochondrion) [Silene vulgaris]
           gi|385198426|gb|AFI44312.1| ATPase subunit 4
           (mitochondrion) [Silene vulgaris]
          Length = 198

 Score = 54.3 bits (129), Expect(2) = 3e-14
 Identities = 30/46 (65%), Positives = 32/46 (69%), Gaps = 6/46 (13%)
 Frame = +2

Query: 101 QQRLLRISLRICGIVLVR------ATLCEKTIQALLCCNFNVKSTT 220
           QQRLLRISLRICG V+        A  CEKT+QALLC N NVKS T
Sbjct: 89  QQRLLRISLRICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSAT 134



 Score = 48.5 bits (114), Expect(2) = 3e-14
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = +3

Query: 231 SNCHMRIQDDLVTGFHFKVSERFPKWMLKASSIVELIRE 347
           S+   R+QDDLVTGFHF VSERF       +SIVELIRE
Sbjct: 140 SSRRTRLQDDLVTGFHFSVSERFVPGSTLKASIVELIRE 178


>ref|YP_004842186.1| hypothetical protein BemaM_p142 [Beta macrocarpa]
           gi|54606726|dbj|BAD66749.1| 25 kDa membrane protein
           [Beta vulgaris subsp. vulgaris]
           gi|345500172|emb|CBX24991.1| hypothetical protein [Beta
           macrocarpa]
          Length = 198

 Score = 53.9 bits (128), Expect(2) = 4e-14
 Identities = 29/46 (63%), Positives = 32/46 (69%), Gaps = 6/46 (13%)
 Frame = +2

Query: 101 QQRLLRISLRICGIVLVR------ATLCEKTIQALLCCNFNVKSTT 220
           QQRLLR+SLRICG V+        A  CEKT+QALLC N NVKS T
Sbjct: 89  QQRLLRVSLRICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSAT 134



 Score = 48.5 bits (114), Expect(2) = 4e-14
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = +3

Query: 231 SNCHMRIQDDLVTGFHFKVSERFPKWMLKASSIVELIRE 347
           S+   R+QDDLVTGFHF VSERF       +SIVELIRE
Sbjct: 140 SSRRTRLQDDLVTGFHFSVSERFVPGSTLKASIVELIRE 178


>ref|YP_003587358.1| ATPase subunit 4 [Cucurbita pepo] gi|259156802|gb|ACV96663.1|
           ATPase subunit 4 [Cucurbita pepo]
          Length = 191

 Score = 51.2 bits (121), Expect(2) = 3e-13
 Identities = 28/46 (60%), Positives = 31/46 (67%), Gaps = 6/46 (13%)
 Frame = +2

Query: 101 QQRLLRISLRICGIVLVR------ATLCEKTIQALLCCNFNVKSTT 220
           QQRLLRISLRICG V+        A  CEKT+QAL+C N NVK  T
Sbjct: 89  QQRLLRISLRICGTVIESLPMARYAPKCEKTVQALVCRNLNVKLAT 134



 Score = 48.5 bits (114), Expect(2) = 3e-13
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +3

Query: 243 MRIQDDLVTGFHFKVSERFPKWMLKASSIVELIRE 347
           +R+QDDLVTGFHF VSERF       +SIVELIRE
Sbjct: 144 IRLQDDLVTGFHFSVSERFVPGCTLKASIVELIRE 178


>gb|AAW30209.1| ATPase subunit 4 [Amborella trichopoda]
          Length = 157

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 46/100 (46%), Positives = 53/100 (53%), Gaps = 17/100 (17%)
 Frame = +2

Query: 101 QQRLLRISLRICGIVLVR------ATLCEKTIQALLCCNFNVKSTTPARLQLSYAYSGRS 262
           QQRLLRISL+ICG V+        A  CEKT+QALLC N NVKS T          +  S
Sbjct: 66  QQRLLRISLQICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSATRP--------NATS 117

Query: 263 SNRISLQ-----------SE*EISQVDAESIFYSRTHSRG 349
           S RI LQ           SE  +     ++ FYSRTHSRG
Sbjct: 118 SRRIRLQDDLVTGFHFLVSERFVPGSTLKASFYSRTHSRG 157


>dbj|BAJ22086.1| ATPase subunit 4 [Cycas taitungensis]
          Length = 207

 Score = 41.6 bits (96), Expect(2) = 1e-07
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +2

Query: 83  FLRKP*QQRLLRISLRICGIVLVRATL---------CEKTIQALLCCNFNVKSTT 220
           FL    QQ+LLRISLR     +V + L         CEKT+QA+LC N NVK  T
Sbjct: 83  FLESNEQQQLLRISLRSITPEIVESLLNEMARCAPKCEKTVQAVLCRNLNVKLAT 137



 Score = 38.9 bits (89), Expect(2) = 1e-07
 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = +3

Query: 243 MRIQDDLVTGFHFKVSERFPKWM--LKASSIVELIRE 347
           +R++DD+VTGFHF VSE+F       K + I ELIRE
Sbjct: 147 IRLRDDIVTGFHFSVSEKFVPCTTDTKKAFIAELIRE 183